BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0120600 Os11g0120600|Os11g0120600
         (151 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0120600  Histidine triad (HIT) protein family protein        314   1e-86
Os12g0120400  Similar to ATPase-like protein                      114   2e-26
Os12g0120200  Similar to ATPase-like protein                       67   4e-12

>Os11g0120600 Histidine triad (HIT) protein family protein
          Length = 151

 Score =  314 bits (805), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MEAAYKFGPYKIDAREVFHSTPLSYAMVNLRPLLPVCPKREVKRFADLSSNEISDLWVTA 60
           MEAAYKFGPYKIDAREVFHSTPLSYAMVNLRPLLPVCPKREVKRFADLSSNEISDLWVTA
Sbjct: 1   MEAAYKFGPYKIDAREVFHSTPLSYAMVNLRPLLPVCPKREVKRFADLSSNEISDLWVTA 60

Query: 61  KEVGIRLEQYHKASSLTFAIQDGPQAGQTVPHVHIHVIPRKKGDFEKNDEIYDAIDVKER 120
           KEVGIRLEQYHKASSLTFAIQDGPQAGQTVPHVHIHVIPRKKGDFEKNDEIYDAIDVKER
Sbjct: 61  KEVGIRLEQYHKASSLTFAIQDGPQAGQTVPHVHIHVIPRKKGDFEKNDEIYDAIDVKER 120

Query: 121 ELKEKLDLDIERKDRTMKEMAHEANEYREGH 151
           ELKEKLDLDIERKDRTMKEMAHEANEYREGH
Sbjct: 121 ELKEKLDLDIERKDRTMKEMAHEANEYREGH 151



>Os12g0120400 Similar to ATPase-like protein
          Length = 120

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 60/71 (84%)

Query: 36  VCPKREVKRFADLSSNEISDLWVTAKEVGIRLEQYHKASSLTFAIQDGPQAGQTVPHVHI 95
           +CPK  VK FADLS +E  DLW+ AK++G+R+EQY +ASSLTF IQDGP +GQTVPHVH+
Sbjct: 6   ICPKSLVKLFADLSPDETRDLWIMAKDIGVRVEQYQRASSLTFTIQDGPHSGQTVPHVHV 65

Query: 96  HVIPRKKGDFE 106
           H++PR+K DFE
Sbjct: 66  HIVPRRKEDFE 76



>Os12g0120200 Similar to ATPase-like protein
          Length = 38

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 115 IDVKERELKEKLDLDIERKDRTMKEMAHEANEYR 148
           IDVKERELKEKLDLDIERKDRTM+EMAHEANEYR
Sbjct: 1   IDVKERELKEKLDLDIERKDRTMEEMAHEANEYR 34



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,981,423
Number of extensions: 197174
Number of successful extensions: 550
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 3
Length of query: 151
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 59
Effective length of database: 12,232,113
Effective search space: 721694667
Effective search space used: 721694667
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)