FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0120200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATPase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.0461) R2 : 0.272
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.84 (0.144) R2dC : 0.381 R2C : 0.0856
β3 : -0.896 (0.11) R2dE : 0.171 R2E : -0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.552 (0.103) R2dN8 : 0.0689 R2N8 : -0.0105
σ : 0.858
deviance : 339.46
__
_____
C
peak time of C : 6.64
E
wheather : temperature
threshold : 25.62
memory length : 124
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.7
open length of G : 21.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.33 0.836 4.8 0.208 1.78 -0.854 -1.4 2.04 -0.595 6.8 25.65 108 21 21.2
329.26 0.845 4.8 0.606 1.83 -0.859 -0.219 -- -0.5 6.71 25.66 124 20.8 21.2
320.01 0.833 4.8 0.292 1.77 -0.859 -- 1.55 -0.571 6.77 25.69 116 20.7 21.4
329.08 0.845 4.79 0.579 1.82 -0.844 -- -- -0.512 6.72 25.69 124 20.8 21.2
426.6 0.962 4.78 0.364 -- -0.653 -- 1.65 -0.42 -- 27.2 1360 20.7 22.3
360.41 0.89 4.69 0.872 1.22 -- -0.259 -- -0.145 7.89 -- -- -- --
360.61 0.889 4.69 0.865 1.22 -- -- -- -0.145 7.89 -- -- -- --
407.5 0.94 4.74 1.04 -- 1.36 -- -- -0.222 -- 34.4 234 21 22.4
339.46 0.858 4.79 -- 1.84 -0.896 -- -- -0.552 6.64 25.62 124 20.7 21.2
441.73 0.982 4.72 0.879 -- -- -- -- -0.128 -- -- -- -- --
380.34 0.912 4.72 -- 1.23 -- -- -- -0.241 7.84 -- -- -- --
428.55 0.964 4.78 -- -- -1 -- -- -0.38 -- 14.7 47520 18.7 22.6
462.1 1 4.75 -- -- -- -- -- -0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.50 humidity 80.0 43200 > th dose dependent rect. 18 5
3 323.58 humidity 80.0 43200 > th dose dependent rect. 20 1
5 324.14 precipitation 0.1 43200 < th dose independent rect. 19 1
6 324.14 precipitation 0.1 43200 < th dose dependent rect. 19 1
8 324.58 precipitation 0.1 43200 > th dose independent rect. 19 1
9 324.93 humidity 90.0 43200 < th dose independent rect. 22 1
13 325.46 precipitation 0.1 43200 > th dose dependent rect. 19 1
14 325.67 humidity 90.0 43200 > th dose dependent rect. 6 1
19 326.15 temperature 20.0 720 > th dose dependent rect. 21 13
23 326.58 humidity 80.0 43200 > th dose dependent rect. 6 20
25 326.64 temperature 20.0 720 > th dose dependent rect. 22 11
31 326.95 humidity 90.0 43200 > th dose independent rect. 5 2
46 327.76 humidity 90.0 43200 < th dose independent rect. 6 1
55 328.10 humidity 90.0 43200 < th dose independent rect. 5 3
57 328.12 humidity 90.0 43200 > th dose independent rect. 22 1
60 328.19 temperature 25.0 90 < th dose independent rect. 21 21
78 328.69 radiation 1.0 43200 > th dose independent rect. 5 1
79 328.69 radiation 1.0 43200 < th dose independent rect. 5 1
88 328.86 humidity 80.0 43200 > th dose dependent rect. 12 13
90 328.88 humidity 90.0 43200 < th dose independent rect. 20 20
91 328.88 humidity 80.0 43200 > th dose dependent sin 18 NA
109 329.04 humidity 90.0 43200 > th dose independent rect. 22 18
114 329.08 temperature 20.0 720 > th dose dependent sin 9 NA
120 329.15 humidity 80.0 43200 > th dose dependent rect. 4 7
123 329.16 humidity 90.0 43200 < th dose independent rect. 11 22
124 329.16 humidity 90.0 43200 < th dose independent rect. 4 23
138 329.26 humidity 80.0 43200 > th dose dependent sin 3 NA
144 329.28 humidity 90.0 43200 > th dose independent rect. 20 20
149 329.29 humidity 90.0 43200 > th dose independent sin 5 NA
178 329.43 humidity 90.0 43200 > th dose independent rect. 11 22
179 329.44 humidity 90.0 43200 < th dose independent sin 5 NA
186 329.44 radiation 1.0 43200 < th dose dependent rect. 5 1
192 329.47 humidity 90.0 43200 > th dose dependent rect. 24 16
198 329.50 humidity 90.0 43200 < th dose independent rect. 15 23
200 329.51 humidity 90.0 43200 < th dose independent no NA NA
201 329.51 humidity 90.0 43200 > th dose independent rect. 20 4
206 329.53 humidity 90.0 43200 < th dose independent rect. 15 21
218 329.55 humidity 90.0 43200 < th dose independent rect. 4 5
259 329.65 humidity 90.0 43200 < th dose independent rect. 15 19
261 329.65 humidity 90.0 43200 > th dose independent rect. 5 23
285 329.70 humidity 90.0 43200 > th dose independent rect. 3 23
286 329.70 radiation 1.0 43200 < th dose dependent rect. 23 7
296 329.73 radiation 1.0 43200 < th dose dependent rect. 19 11
303 329.75 humidity 90.0 43200 < th dose independent rect. 15 10
310 329.76 humidity 90.0 43200 < th dose independent rect. 13 13
314 329.77 humidity 90.0 43200 > th dose dependent sin 5 NA
341 329.84 radiation 1.0 43200 > th dose independent rect. 17 1
344 329.84 humidity 90.0 43200 > th dose independent rect. 15 22
354 329.88 humidity 90.0 43200 > th dose independent no NA NA
372 329.92 humidity 80.0 43200 > th dose dependent rect. 3 11
385 329.95 humidity 90.0 43200 > th dose independent rect. 15 19
400 330.01 radiation 1.0 43200 > th dose independent rect. 17 13
416 330.04 radiation 1.0 43200 < th dose independent rect. 21 9
420 330.05 radiation 1.0 43200 < th dose independent rect. 24 6
426 330.07 radiation 1.0 43200 < th dose independent rect. 2 4
427 330.07 humidity 90.0 43200 > th dose dependent rect. 11 21
461 330.16 humidity 90.0 43200 > th dose independent rect. 17 8
503 330.24 temperature 20.0 1440 > th dose dependent rect. 23 1
536 330.32 humidity 80.0 43200 > th dose dependent rect. 15 23
553 330.37 humidity 90.0 43200 > th dose dependent rect. 17 23
571 330.42 atmosphere 1015.0 43200 > th dose independent rect. 1 1
573 330.42 humidity 80.0 43200 > th dose dependent no NA NA
576 330.42 humidity 90.0 43200 > th dose dependent rect. 17 20
602 330.48 humidity 90.0 43200 < th dose independent rect. 1 15
606 330.49 humidity 90.0 43200 > th dose independent rect. 12 14
623 330.53 humidity 90.0 43200 < th dose independent sin 16 NA
673 330.62 humidity 90.0 43200 > th dose independent rect. 15 11
709 330.70 wind 1.0 14400 < th dose independent rect. 19 10
713 330.70 temperature 30.0 720 < th dose dependent rect. 20 12
716 330.71 radiation 1.0 43200 < th dose independent rect. 17 1
752 330.80 atmosphere 1015.0 43200 > th dose independent rect. 10 1
760 330.82 atmosphere 1015.0 43200 < th dose independent rect. 10 1
807 330.93 humidity 80.0 43200 > th dose independent rect. 9 14
839 331.03 temperature 30.0 43200 > th dose dependent rect. 12 1
848 331.05 wind 1.0 14400 > th dose independent rect. 19 10
857 331.07 wind 1.0 43200 > th dose independent rect. 16 1
901 331.18 humidity 80.0 43200 > th dose independent sin 21 NA
917 331.22 humidity 90.0 43200 > th dose independent sin 16 NA
930 331.25 radiation 10.0 43200 < th dose dependent rect. 19 7