Os11g0120600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histidine triad (HIT) protein family protein.
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Os11g0120600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histidine triad (HIT) protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.33 | 0.19 | 11.6 | -0.762 | 0.171 | -0.542 | -0.19 | 0.892 | -0.284 | 22.7 | 30.19 | 835 | -- | -- |
| 17.21 | 0.193 | 11.6 | -0.589 | 0.184 | -0.535 | -0.388 | -- | -0.219 | 22.2 | 38.09 | 947 | -- | -- |
| 16.45 | 0.189 | 11.6 | -0.783 | 0.172 | -0.538 | -- | 1.03 | -0.29 | 22.6 | 30.1 | 847 | -- | -- |
| 17.52 | 0.195 | 11.6 | -0.578 | 0.17 | -0.551 | -- | -- | -0.244 | 22.6 | 29.5 | 859 | -- | -- |
| 18.02 | 0.198 | 11.7 | -0.814 | -- | -0.67 | -- | 1 | -0.32 | -- | 30.01 | 829 | -- | -- |
| 21.27 | 0.216 | 11.6 | -0.44 | 0.28 | -- | -0.349 | -- | -0.132 | 22.4 | -- | -- | -- | -- |
| 21.76 | 0.218 | 11.6 | -0.426 | 0.282 | -- | -- | -- | -0.131 | 22.4 | -- | -- | -- | -- |
| 19.02 | 0.203 | 11.6 | -0.605 | -- | -0.678 | -- | -- | -0.264 | -- | 29.6 | 829 | -- | -- |
| 25.19 | 0.235 | 11.6 | -- | 0.343 | -0.297 | -- | -- | -0.134 | 23.2 | 29.6 | 824 | -- | -- |
| 26.63 | 0.241 | 11.6 | -0.421 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 26.54 | 0.241 | 11.6 | -- | 0.28 | -- | -- | -- | -0.0834 | 22.3 | -- | -- | -- | -- |
| 27.79 | 0.246 | 11.6 | -- | -- | -0.439 | -- | -- | -0.157 | -- | 29.7 | 790 | -- | -- |
| 31.31 | 0.261 | 11.6 | -- | -- | -- | -- | -- | -0.0832 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.89 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 2 | 14.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 3 | 14.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 13 | 15.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 59 | 15.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 87 | 15.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 17 |
| 101 | 15.60 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 122 | 15.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 258 | 16.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 414 | 16.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 439 | 16.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 624 | 16.40 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 641 | 16.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 767 | 16.46 | humidity | 90 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 768 | 16.46 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 12 |
| 814 | 16.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 818 | 16.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 923 | 16.51 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 926 | 16.51 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 950 | 16.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |