Os12g0120400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATPase-like protein.
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Os12g0120400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATPase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.66 | 0.748 | 7.69 | -1.46 | 0.559 | 3.39 | 1.38 | -3.3 | -0.451 | 6.25 | 24.9 | 8531 | -- | -- |
| 262.78 | 0.755 | 7.58 | -0.669 | 0.709 | 3.51 | 1.11 | -- | -0.32 | 6.24 | 24.9 | 10640 | -- | -- |
| 258.17 | 0.748 | 7.69 | -1.43 | 0.569 | 3.39 | -- | -3.26 | -0.456 | 5.91 | 24.9 | 8554 | -- | -- |
| 267.32 | 0.761 | 7.57 | -0.541 | 0.675 | 3.45 | -- | -- | -0.286 | 5.73 | 24.9 | 10607 | -- | -- |
| 274.86 | 0.772 | 7.69 | -1.41 | -- | 3.42 | -- | -3.2 | -0.44 | -- | 24.9 | 8528 | -- | -- |
| 644.02 | 1.19 | 7.28 | 1.32 | 0.737 | -- | 1.44 | -- | 0.999 | 5.21 | -- | -- | -- | -- |
| 649.05 | 1.19 | 7.29 | 1.32 | 0.746 | -- | -- | -- | 0.992 | 4.92 | -- | -- | -- | -- |
| 282.82 | 0.783 | 7.57 | -0.506 | -- | 3.45 | -- | -- | -0.278 | -- | 24.8 | 10000 | -- | -- |
| 272.56 | 0.769 | 7.56 | -- | 0.59 | 3.32 | -- | -- | -0.115 | 5.7 | 24.92 | 10250 | -- | -- |
| 678.37 | 1.22 | 7.29 | 1.35 | -- | -- | -- | -- | 1.01 | -- | -- | -- | -- | -- |
| 694.99 | 1.23 | 7.32 | -- | 0.77 | -- | -- | -- | 0.844 | 4.86 | -- | -- | -- | -- |
| 287.2 | 0.789 | 7.55 | -- | -- | 3.29 | -- | -- | -0.0988 | -- | 25 | 9985 | -- | -- |
| 726.28 | 1.26 | 7.33 | -- | -- | -- | -- | -- | 0.861 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 3 | 249.93 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 4 | 249.94 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 5 | 250.08 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 6 | 250.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 11 | 250.46 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 56 | 252.11 | temperature | 25 | 14400 | > th | dose independent | sin | 16 | NA |
| 72 | 252.48 | temperature | 25 | 14400 | < th | dose independent | sin | 16 | NA |
| 81 | 252.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 86 | 252.75 | temperature | 20 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 88 | 252.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 105 | 253.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 116 | 253.12 | temperature | 25 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 117 | 253.14 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 126 | 253.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 127 | 253.24 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 143 | 253.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 145 | 253.33 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 151 | 253.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 164 | 253.42 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 175 | 253.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 181 | 253.57 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 201 | 253.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 223 | 253.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 229 | 253.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 239 | 253.84 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 266 | 253.96 | temperature | 25 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 279 | 254.03 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 303 | 254.16 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 312 | 254.22 | temperature | 25 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 327 | 254.30 | temperature | 25 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 328 | 254.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 331 | 254.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 407 | 254.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 420 | 254.76 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 511 | 255.25 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 644 | 255.82 | temperature | 25 | 14400 | < th | dose independent | sin | 5 | NA |
| 751 | 256.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 835 | 256.48 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 868 | 256.63 | temperature | 25 | 14400 | > th | dose independent | sin | 5 | NA |
| 959 | 257.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 975 | 257.20 | temperature | 25 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 980 | 257.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |