BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0120400 Os12g0120400|AK099904
         (120 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0120400  Similar to ATPase-like protein                      213   2e-56
Os11g0120600  Histidine triad (HIT) protein family protein         95   1e-20

>Os12g0120400 Similar to ATPase-like protein
          Length = 120

 Score =  213 bits (542), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 110/120 (91%)

Query: 1   IIHVLICPKSLVKLFADLSPDETRDLWIMAKDIGVRVEQYQRASSLTFTIQDGPHSGQTX 60
           IIHVLICPKSLVKLFADLSPDETRDLWIMAKDIGVRVEQYQRASSLTFTIQDGPHSGQT 
Sbjct: 1   IIHVLICPKSLVKLFADLSPDETRDLWIMAKDIGVRVEQYQRASSLTFTIQDGPHSGQTV 60

Query: 61  XXXXXXXXXRRKEDFENNDNNNGMYIVNIFRIFLRGTANLKHKYNANETRSAGLKKLSNT 120
                    RRKEDFENNDNNNGMYIVNIFRIFLRGTANLKHKYNANETRSAGLKKLSNT
Sbjct: 61  PHVHVHIVPRRKEDFENNDNNNGMYIVNIFRIFLRGTANLKHKYNANETRSAGLKKLSNT 120



>Os11g0120600 Histidine triad (HIT) protein family protein
          Length = 151

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%)

Query: 6   ICPKSLVKLFADLSPDETRDLWIMAKDIGVRVEQYQRASSLTFTIQDGPHSGQTXXXXXX 65
           +CPK  VK FADLS +E  DLW+ AK++G+R+EQY +ASSLTF IQDGP +GQT      
Sbjct: 36  VCPKREVKRFADLSSNEISDLWVTAKEVGIRLEQYHKASSLTFAIQDGPQAGQTVPHVHI 95

Query: 66  XXXXRRKEDFENNDN 80
               R+K DFE ND 
Sbjct: 96  HVIPRKKGDFEKNDE 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,289,629
Number of extensions: 99338
Number of successful extensions: 129
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)