BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0114700 Os11g0114700|AK070834
(801 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0114700 PAP/25A core domain containing protein 1489 0.0
Os03g0336700 PAP/25A core domain containing protein 403 e-112
Os12g0283100 DNA polymerase, beta-like region domain contai... 369 e-102
Os12g0114200 PAP/25A core domain containing protein 330 4e-90
Os03g0210800 Hypothetical protein 112 1e-24
>Os11g0114700 PAP/25A core domain containing protein
Length = 801
Score = 1489 bits (3855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/801 (90%), Positives = 727/801 (90%)
Query: 1 MVDNQGCSPALEXXXXXXXXXXXXXXXEAWDPLEAAAGAVVARIQPNPPSEDRRAAVIAY 60
MVDNQGCSPALE EAWDPLEAAAGAVVARIQPNPPSEDRRAAVIAY
Sbjct: 1 MVDNQGCSPALEPVPTPPNPDPSSISPEAWDPLEAAAGAVVARIQPNPPSEDRRAAVIAY 60
Query: 61 VQHLLRCTVGCQVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDA 120
VQHLLRCTVGCQVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDA
Sbjct: 61 VQHLLRCTVGCQVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDA 120
Query: 121 EFEVKDVQYIHAEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEKYHLFKRSIM 180
EFEVKDVQYIHAEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEKYHLFKRSIM
Sbjct: 121 EFEVKDVQYIHAEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEKYHLFKRSIM 180
Query: 181 LIKAWCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWD 240
LIKAWCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWD
Sbjct: 181 LIKAWCYYESRILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRFLDYYSKFDWD 240
Query: 241 NKGISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSEKNTQVFPR 300
NKGISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSEKNTQVFPR
Sbjct: 241 NKGISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSEKNTQVFPR 300
Query: 301 KFFNIVDPLKQSNNLGRSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNT 360
KFFNIVDPLKQSNNLGRSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNT
Sbjct: 301 KFFNIVDPLKQSNNLGRSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNT 360
Query: 361 LKRHCSRVRPDVQEIALDFNGERADNDSSPLYSNNSFGDLSDEFNNISISDSSNHGSLRQ 420
LKRHCSRVRPDVQEIALDFNGERADNDSSPLYSNNSFGDLSDEFNNISISDSSNHGSLRQ
Sbjct: 361 LKRHCSRVRPDVQEIALDFNGERADNDSSPLYSNNSFGDLSDEFNNISISDSSNHGSLRQ 420
Query: 421 NGWNYVAENKERKSVSGGLLASKATNPAATNSTGMTNGSDSCEPASPSITGAHSLPSEEG 480
NGWNYVAENKERKSVSGGLLASKATNPAATNSTGMTNGSDSCEPASPSITGAHSLPSEEG
Sbjct: 421 NGWNYVAENKERKSVSGGLLASKATNPAATNSTGMTNGSDSCEPASPSITGAHSLPSEEG 480
Query: 481 HDALDLFNESESGTKAGIKYGTNPSHHGMSTVSYAGRSHQSFEEVDNDDRGTIDSNWSDL 540
HDALDLFNESESGTKAGIKYGTNPSHHGMSTVSYAGRSHQSFEEVDNDDRGTIDSNWSDL
Sbjct: 481 HDALDLFNESESGTKAGIKYGTNPSHHGMSTVSYAGRSHQSFEEVDNDDRGTIDSNWSDL 540
Query: 541 TGDYTTNFNNLLYAQGFHQDYPMNQYYXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXVYG 600
TGDYTTNFNNLLYAQGFHQDYPMNQYY Q VYG
Sbjct: 541 TGDYTTNFNNLLYAQGFHQDYPMNQYYPFGPVYYPIPSPPPARYQNRRSSNGHSRNNVYG 600
Query: 601 YAGTNGIGPAPCPPGYLIMRPYSQIDDSNRARGTGTYFPNPNLSKDRSPSGRGGRGKTHF 660
YAGTNGIGPAPCPPGYLIMRPYSQIDDSNRARGTGTYFPNPNLSKDRSPSGRGGRGKTHF
Sbjct: 601 YAGTNGIGPAPCPPGYLIMRPYSQIDDSNRARGTGTYFPNPNLSKDRSPSGRGGRGKTHF 660
Query: 661 LPHNHQRPHHYGRADMSADLTPSEELRHIYDPDANDLGXXXXXXXXXXXXXXEAPREIVH 720
LPHNHQRPHHYGRADMSADLTPSEELRHIYDPDANDLG EAPREIVH
Sbjct: 661 LPHNHQRPHHYGRADMSADLTPSEELRHIYDPDANDLGIPSSLRISIPSPSSEAPREIVH 720
Query: 721 GNGFIQPPAKKLEFGTLGALPLEVTSQELGINRLNTXXXXXXXXXXXXXXXXNNPGISSN 780
GNGFIQPPAKKLEFGTLGALPLEVTSQELGINRLNT NNPGISSN
Sbjct: 721 GNGFIQPPAKKLEFGTLGALPLEVTSQELGINRLNTASDSQPSASASPMSLANNPGISSN 780
Query: 781 QMRNAQPYHLKDNGDFPPLSS 801
QMRNAQPYHLKDNGDFPPLSS
Sbjct: 781 QMRNAQPYHLKDNGDFPPLSS 801
>Os03g0336700 PAP/25A core domain containing protein
Length = 1035
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/340 (57%), Positives = 248/340 (72%), Gaps = 6/340 (1%)
Query: 34 EAAAGAVVARIQPNPPSEDRRAAVIAYVQHLLRCTVGCQVFPFGSVPLKTYLPDGDIDLT 93
E AAG VV R++P SE RRAAV+ Y + L+ +GC+VF +GSVPLKTYLPDGD+DLT
Sbjct: 37 EEAAGEVVRRVRPTEASERRRAAVVGYARRLVGTALGCEVFAYGSVPLKTYLPDGDVDLT 96
Query: 94 AFGHSS-DEILAKQVQAVLESEEARKDAEFEVKDVQYIHAEVKLVKCIVQNIIVDISFNQ 152
G++S L + +L+SEE DAEFEVKD+Q I+AEV+L+KC ++NI+VDISFNQ
Sbjct: 97 VLGNTSYGSTLIDDIYHILQSEEQNCDAEFEVKDLQLINAEVRLIKCTIENIVVDISFNQ 156
Query: 153 FGGLCTLCFLEKVDQKFEKYHLFKRSIMLIKAWCYYESRILGAHHGLISTYALEILVLYI 212
GG+C LCFLE VD+K K HL K SI+LIKAWCYYESR+LGAHHGLISTYALE L+LYI
Sbjct: 157 TGGICALCFLELVDRKVGKNHLVKNSIILIKAWCYYESRLLGAHHGLISTYALETLILYI 216
Query: 213 FHLFHGTLDGPLAVLYRFLDYYSKFDWDNKGISLYGPISLSSLPELVTDSPDTVNDDFTM 272
F+LFH +L GPL VLYRFL+Y+SKFDWDN ISL GP++LSSLP + ++ +T D
Sbjct: 217 FNLFHKSLHGPLEVLYRFLEYFSKFDWDNYCISLNGPVALSSLPNQIVEATNTPGSDLLF 276
Query: 273 REDFLKECAQWFTVLPRNSEKNTQVFPRKFFNIVDPLKQSNNLGRSVSKGNFLRIRSAFD 332
++FL Q N+E F K+ NI+DPLK+ NNLGRSV+K +F RIR+AF
Sbjct: 277 DKEFLNNSVQKTDSNACNTE-----FRSKYLNIIDPLKEHNNLGRSVNKASFNRIRTAFS 331
Query: 333 FGARKLGKIIQVPDNFTMDEVNQFFRNTLKRHCSRVRPDV 372
+GA+KLG+++ + DE+ FF+NTL R S VRPD+
Sbjct: 332 YGAQKLGQVLLLQPELIPDEIYGFFKNTLNRIGSGVRPDI 371
>Os12g0283100 DNA polymerase, beta-like region domain containing protein
Length = 989
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 265/418 (63%), Gaps = 24/418 (5%)
Query: 40 VVARIQPNPPSEDRRAAVIAYVQHLLRCTVGCQVFPFGSVPLKTYLPDGDIDLTAFGHSS 99
V+ R+ P +E RR V+ Y++ LL +GC+V FGSVPLK+YLPDGD+D+T G+++
Sbjct: 56 VLLRVAPTEEAERRRQDVVGYLRRLLGTALGCEVIAFGSVPLKSYLPDGDVDITVLGNTA 115
Query: 100 -DEILAKQVQAVLESEEARKDAEFEVKDVQYIHAEVKLVKCIVQNIIVDISFNQFGGLCT 158
D V ++LESEE AE E+K + +I AEVKL+KC+++NI+VDISFNQ GG+ T
Sbjct: 116 LDGACISDVHSILESEEQDSGAELEIKGLHFIDAEVKLIKCVIENIVVDISFNQIGGVST 175
Query: 159 LCFLEKVDQKFEKYHLFKRSIMLIKAWCYYESRILGAHHGLISTYALEILVLYIFHLFHG 218
LCFLE D+K K HLFKRSIMLIKAWCY+ESRILGAHHGL+STYALE LVLYIF++FH
Sbjct: 176 LCFLELADRKVGKNHLFKRSIMLIKAWCYHESRILGAHHGLLSTYALETLVLYIFNIFHK 235
Query: 219 TLDGPLAVLYRFLDYYSKFDWDNKGISLYGPISLSSLPELVTDSPDTVNDDFTMREDFLK 278
+L GPL LY+FL+Y+SKFDWD ISL GP+ LSSLP + P ++ D+ +
Sbjct: 236 SLHGPLEALYKFLEYFSKFDWDKYCISLNGPVLLSSLPSPAVE-PSSIQDELLFGKK--- 291
Query: 279 ECAQWFTVLPRNSEKNTQVFPRKFFNIVDPLKQSNNLGRSVSKGNFLRIRSAFDFGARKL 338
LP S+ + F K NI+DPLK SNNLGRSVS+G+F RIR A FGA+KL
Sbjct: 292 -------TLPEVSDGSNINFCLKHLNIIDPLKWSNNLGRSVSRGSFYRIRGALSFGAQKL 344
Query: 339 GKIIQVPDNFTMDEVNQFFRNTLKRHCSRVRPDV---QEIALDFNGERADNDSSPLYSNN 395
G+I+ + + E+ FF NTLKRH R DV I + E A +P ++N+
Sbjct: 345 GQILMLHSDLIPTEIFGFFANTLKRHGRGERSDVGNNDSIESLLDPEYALGKDAPDFTNS 404
Query: 396 SFGDLSDEFNNISISDSSN---HGSLRQNGWNYVA----ENKERKSVSGGLLASKATN 446
DE N ++ +S HG + + WN + + + VSG L S +T+
Sbjct: 405 DRNQ--DENRNPNLQTTSYRYFHGDAKDHPWNKIWLTNFDIQYYNMVSGASLMSHSTS 460
>Os12g0114200 PAP/25A core domain containing protein
Length = 178
Score = 330 bits (845), Expect = 4e-90, Method: Composition-based stats.
Identities = 155/159 (97%), Positives = 155/159 (97%)
Query: 72 QVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDAEFEVKDVQYIH 131
QVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDAEFEVKDVQYIH
Sbjct: 1 QVFPFGSVPLKTYLPDGDIDLTAFGHSSDEILAKQVQAVLESEEARKDAEFEVKDVQYIH 60
Query: 132 AEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEKYHLFKRSIMLIKAWCYYESR 191
AEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEK HLFKRSIMLIKAWCYYESR
Sbjct: 61 AEVKLVKCIVQNIIVDISFNQFGGLCTLCFLEKVDQKFEKNHLFKRSIMLIKAWCYYESR 120
Query: 192 ILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVLYRF 230
ILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAV F
Sbjct: 121 ILGAHHGLISTYALEILVLYIFHLFHGTLDGPLAVSSDF 159
>Os03g0210800 Hypothetical protein
Length = 871
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 258 LVTDSPDTVNDDFTMREDFLKECAQWFTVLPRNSE-KNTQVFPRKFFNIVDPLKQSNNLG 316
+ + P + + + FL +C+ + V PR E + Q F K FN++DPL+ +NNLG
Sbjct: 1 MTAEPPRMDAAELLLSKSFLDKCSYAYAVTPRIQESQGQQPFVSKHFNVIDPLRTNNNLG 60
Query: 317 RSVSKGNFLRIRSAFDFGARKLGKIIQVPDNFTMDEVNQFFRNTLKRHCSRVRPDVQEIA 376
RSVSKGNF RIRSAF FGA++L K+++ P + EVNQFF NT RH S RPD +
Sbjct: 61 RSVSKGNFFRIRSAFSFGAKRLAKLLECPKEDLIAEVNQFFTNTWIRHGSGNRPDAPTLG 120
Query: 377 L 377
L
Sbjct: 121 L 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,540,936
Number of extensions: 1203204
Number of successful extensions: 3038
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3031
Number of HSP's successfully gapped: 5
Length of query: 801
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 692
Effective length of database: 11,344,475
Effective search space: 7850376700
Effective search space used: 7850376700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)