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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0283100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA polymerase, beta-like region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0283) R2 : 0.511
β1 : 1.91 (0.107) R2dD : 0.379 R2D : 0.25
β2 : 0.5 (0.0704) R2dC : 0.0546 R2C : 0.054
β3 : -1.22 (0.119) R2dE : 0.121 R2E : 0.0134
β4 : 2.47 (0.289) R2dD*C : 0.0808 R2D*C : 0.0459
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0965 (0.0603) R2dN8 : 0.00365 R2N8 : 0.0118
σ : 0.528
deviance : 128.41
__
_____
C
peak time of C : 20.8
E
wheather : atmosphere
threshold : 1012
memory length : 10258
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.27 0.53 3.57 1.72 0.503 -1.14 2.48 -1.1 -0.13 20.9 1012 9775 -- --
128.41 0.528 3.54 1.91 0.5 -1.22 2.47 -- -0.0965 20.8 1012 10258 -- --
147.92 0.566 3.56 1.65 0.504 -1.13 -- -1.11 -0.111 21.1 1012 9870 -- --
149.3 0.569 3.54 1.82 0.488 -1.21 -- -- -0.101 21.1 1012 10234 -- --
161.91 0.593 3.55 1.63 -- -1.13 -- -1.12 -0.13 -- 1012 9981 -- --
158.16 0.59 3.54 1.65 0.507 -- 2.48 -- -0.0749 20.7 -- -- -- --
178.52 0.626 3.54 1.56 0.498 -- -- -- -0.0767 21.1 -- -- -- --
163.22 0.595 3.53 1.82 -- -1.22 -- -- -0.104 -- 1012 10175 -- --
230.57 0.707 3.59 -- 0.5 -0.784 -- -- -0.329 20.8 1009 10339 -- --
192.83 0.649 3.53 1.56 -- -- -- -- -0.0796 -- -- -- -- --
242.81 0.729 3.58 -- 0.498 -- -- -- -0.251 21.3 -- -- -- --
244.54 0.728 3.59 -- -- -0.807 -- -- -0.352 -- 1009 10114 -- --
257.25 0.749 3.57 -- -- -- -- -- -0.253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.95 radiation 10.0 43200 > th dose independent rect. 5 1
13 121.99 precipitation 0.1 43200 > th dose dependent rect. 13 1
14 122.34 wind 9.0 43200 > th dose dependent rect. 18 1
15 122.81 wind 9.0 43200 > th dose independent rect. 18 1
17 123.35 wind 9.0 43200 < th dose independent rect. 18 1
18 123.81 precipitation 0.1 43200 > th dose dependent rect. 13 4
19 124.05 precipitation 0.1 43200 > th dose dependent rect. 19 1
20 124.11 precipitation 0.1 43200 > th dose independent rect. 15 2
21 124.11 precipitation 0.1 43200 < th dose independent rect. 15 2
22 124.11 precipitation 0.1 43200 < th dose dependent rect. 15 2
23 124.12 precipitation 0.1 43200 > th dose dependent rect. 15 2
24 124.21 precipitation 0.1 43200 > th dose independent rect. 13 4
27 124.25 precipitation 0.1 43200 < th dose independent rect. 13 4
29 124.25 precipitation 0.1 43200 < th dose dependent rect. 13 4
33 124.53 precipitation 0.1 14400 < th dose independent rect. 13 1
34 124.53 precipitation 0.1 14400 < th dose dependent rect. 13 1
36 124.60 precipitation 0.1 43200 > th dose independent rect. 19 1
39 124.66 precipitation 0.1 14400 > th dose independent rect. 13 1
40 124.79 precipitation 0.1 43200 < th dose independent rect. 19 1
41 124.79 precipitation 0.1 43200 < th dose dependent rect. 19 1
49 125.66 radiation 20.0 14400 < th dose independent rect. 7 1
50 125.76 humidity 80.0 14400 > th dose independent rect. 20 2
51 125.82 wind 3.0 43200 < th dose dependent rect. 2 3
54 125.91 radiation 20.0 14400 < th dose independent rect. 2 6
56 125.91 radiation 20.0 14400 < th dose independent rect. 23 9
57 125.91 radiation 20.0 14400 < th dose independent rect. 19 13
70 126.25 radiation 40.0 4320 > th dose dependent rect. 14 19
71 126.26 humidity 80.0 43200 > th dose independent rect. 13 1
73 126.38 humidity 80.0 43200 > th dose dependent rect. 9 1
92 126.48 wind 1.0 14400 > th dose dependent rect. 14 1
94 126.55 atmosphere 1005.0 14400 > th dose independent rect. 16 2
95 126.56 wind 3.0 14400 > th dose independent rect. 14 1
97 126.62 radiation 40.0 4320 > th dose dependent rect. 14 1
116 126.74 atmosphere 1005.0 14400 < th dose independent rect. 16 2
118 126.76 precipitation 0.1 43200 > th dose independent rect. 13 7
120 126.78 precipitation 0.1 43200 < th dose independent rect. 13 7
121 126.78 precipitation 0.1 43200 < th dose dependent rect. 13 7
128 126.95 humidity 80.0 43200 < th dose independent rect. 13 1
131 126.97 wind 9.0 14400 < th dose dependent rect. 14 1
138 127.08 wind 3.0 14400 < th dose independent rect. 14 1
139 127.08 radiation 20.0 14400 > th dose dependent rect. 7 1
147 127.16 humidity 80.0 14400 < th dose independent rect. 20 2
158 127.34 radiation 20.0 14400 > th dose dependent rect. 17 15
212 127.71 humidity 80.0 43200 > th dose dependent rect. 16 1
215 127.74 humidity 80.0 14400 > th dose independent rect. 19 4
217 127.83 humidity 90.0 14400 > th dose independent rect. 6 1
221 127.86 atmosphere 1005.0 14400 > th dose independent rect. 14 4
222 127.87 humidity 80.0 43200 > th dose independent rect. 9 8
235 128.00 humidity 80.0 43200 < th dose independent rect. 10 1
241 128.06 humidity 80.0 43200 > th dose independent rect. 10 1
242 128.07 humidity 90.0 14400 < th dose independent rect. 6 1
247 128.12 radiation 10.0 14400 < th dose independent rect. 13 1
253 128.16 precipitation 0.1 43200 > th dose dependent rect. 13 7
259 128.19 humidity 80.0 43200 > th dose dependent rect. 9 8
262 128.23 humidity 80.0 14400 > th dose independent rect. 13 11
339 128.72 humidity 80.0 43200 < th dose independent rect. 9 7
411 129.00 humidity 80.0 14400 < th dose dependent rect. 19 3
439 129.14 atmosphere 1005.0 14400 > th dose independent rect. 14 1
450 129.17 atmosphere 1005.0 14400 > th dose dependent rect. 13 1
459 129.23 radiation 20.0 14400 < th dose dependent rect. 13 1
505 129.41 atmosphere 1005.0 14400 > th dose dependent rect. 15 1
513 129.45 humidity 90.0 43200 < th dose independent rect. 8 2
588 129.65 humidity 70.0 43200 > th dose dependent rect. 13 1
593 129.66 radiation 10.0 14400 < th dose independent rect. 11 20
595 129.67 humidity 80.0 14400 > th dose independent sin 16 NA
619 129.72 radiation 10.0 14400 < th dose independent rect. 11 22
634 129.79 radiation 10.0 14400 > th dose independent rect. 13 1
641 129.81 wind 5.0 14400 < th dose independent rect. 18 1
650 129.83 radiation 20.0 14400 < th dose independent sin 11 NA
682 129.91 humidity 80.0 14400 < th dose independent rect. 14 9
686 129.92 humidity 80.0 43200 > th dose independent rect. 9 13
717 130.00 atmosphere 1005.0 14400 > th dose dependent rect. 18 1
724 130.02 wind 1.0 43200 < th dose independent rect. 1 5
732 130.03 precipitation 0.1 43200 > th dose dependent rect. 3 17
760 130.10 radiation 10.0 14400 < th dose independent rect. 17 22
761 130.10 precipitation 0.1 43200 > th dose dependent sin 22 NA
775 130.14 humidity 90.0 43200 > th dose dependent rect. 20 1
776 130.15 precipitation 0.1 43200 > th dose independent sin 21 NA
778 130.16 precipitation 0.1 43200 < th dose independent sin 21 NA
782 130.16 precipitation 0.1 43200 < th dose dependent sin 21 NA
809 130.21 radiation 10.0 14400 < th dose independent rect. 4 11
841 130.25 temperature 25.0 14400 > th dose dependent rect. 24 1
875 130.28 humidity 80.0 43200 < th dose independent rect. 9 13
896 130.31 radiation 10.0 14400 < th dose independent rect. 11 8
974 130.41 temperature 25.0 14400 > th dose independent rect. 6 1
975 130.41 temperature 30.0 14400 < th dose independent rect. 12 2
976 130.41 wind 1.0 43200 < th dose independent rect. 1 3