BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0111800 Os11g0111800|Os11g0111800
         (96 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0111800  Hypothetical protein                                189   3e-49
Os03g0338400  Helix-loop-helix DNA-binding domain containing...    75   1e-14
Os05g0337200  Helix-loop-helix DNA-binding domain containing...    73   4e-14

>Os11g0111800 Hypothetical protein
          Length = 96

 Score =  189 bits (481), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MQVSVSSVELEKKIGFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLE 60
          MQVSVSSVELEKKIGFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLE
Sbjct: 1  MQVSVSSVELEKKIGFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLE 60

Query: 61 ALGSSQSEAAETSVDEQMVRHAVLQAIKKCIDGSSI 96
          ALGSSQSEAAETSVDEQMVRHAVLQAIKKCIDGSSI
Sbjct: 61 ALGSSQSEAAETSVDEQMVRHAVLQAIKKCIDGSSI 96



>Os03g0338400 Helix-loop-helix DNA-binding domain containing protein
          Length = 163

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%), Gaps = 5/76 (6%)

Query: 15  GFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLEALGSSQSEAAETSV 74
           GF +NV   KS P LL S+LEAF+ELGL VL+A  SC D   FRLEA+G   SE     V
Sbjct: 76  GFLVNVFSGKSCPGLLVSILEAFDELGLSVLEATASCTD--TFRLEAIG---SENLMEKV 130

Query: 75  DEQMVRHAVLQAIKKC 90
           DE +V+ AVL+AI+ C
Sbjct: 131 DEHVVKQAVLRAIRSC 146



>Os05g0337200 Helix-loop-helix DNA-binding domain containing protein
          Length = 153

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 3/74 (4%)

Query: 15  GFRINVSMEKSQPELLTSVLEAFEELGLDVLDADVSCADDTAFRLEALGSSQSEAAETSV 74
           GF INV M+KS P LL+S+L+AF+ELGL V++A  SC++  +FRLEA+G  + E A+  +
Sbjct: 78  GFLINVFMDKSSPGLLSSILQAFDELGLTVIEARASCSN--SFRLEAVG-GEHEEADGGI 134

Query: 75  DEQMVRHAVLQAIK 88
           D   V  AV+QAIK
Sbjct: 135 DANAVELAVMQAIK 148



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.323 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,512,788
Number of extensions: 77410
Number of successful extensions: 206
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 17,035,801
Length adjustment: 65
Effective length of query: 31
Effective length of database: 13,641,891
Effective search space: 422898621
Effective search space used: 422898621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)