Os03g0338400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0338400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.87	(0.0231)	R²	:	0.279
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.15	(0.237)	R²_dE	:	0.28	R²_E	:	0.279
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0163	(0.0486)	R²_dN8	:	0.000231	R²_N8	:	-0.000572
σ	:	0.433
deviance	:	86.47
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	80
memory length	:	1838
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	5.98
open length of G	:	0.204

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
83.56	0.429	2.89	0.149	0.0901	7.31	0.000208	11.7	0.0232	1.86	79.51	236	6	0.805
88.96	0.439	2.88	0.11	0.105	3.24	-0.36	--	0.0431	22.1	79.55	1894	5.3	1.22
83.43	0.425	2.89	0.149	0.0955	7.34	--	11.9	0.017	1.94	79.52	230	6	0.8
87.89	0.437	2.87	0.0992	0.0841	3.09	--	--	0.0275	1.57	80.34	1711	5.36	1.23
83.89	0.427	2.89	0.152	--	7.35	--	11.9	0.0232	--	79.56	229	6	0.8
119.07	0.512	2.88	0.068	0.12	--	0.0656	--	-0.0127	5.46	--	--	--	--
119.08	0.511	2.88	0.0681	0.121	--	--	--	-0.013	5.4	--	--	--	--
86.23	0.432	2.87	0.115	--	3.14	--	--	0.0316	--	79.58	1840	5.98	0.22
88.01	0.437	2.87	--	0.0834	3.08	--	--	0.0167	1.81	80.65	1758	5.38	1.18
119.84	0.512	2.88	0.0722	--	--	--	--	-0.00999	--	--	--	--	--
119.2	0.511	2.88	--	0.122	--	--	--	-0.0205	5.38	--	--	--	--
86.47	0.433	2.87	--	--	3.15	--	--	0.0163	--	80	1838	5.98	0.204
119.97	0.511	2.88	--	--	--	--	--	-0.018	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	86.04	humidity	80	270	< th	dose dependent	rect.	6	1
2	87.10	humidity	80	270	< th	dose independent	rect.	6	1
12	91.52	temperature	20	90	< th	dose dependent	rect.	8	1
18	92.29	temperature	20	90	< th	dose independent	rect.	8	1
35	95.47	humidity	80	1440	> th	dose independent	rect.	4	2
37	95.61	humidity	80	1440	> th	dose independent	rect.	3	4
64	97.13	temperature	20	90	< th	dose independent	rect.	7	4
65	97.15	temperature	20	30	< th	dose dependent	rect.	6	4
69	97.19	temperature	20	30	< th	dose dependent	rect.	6	2
123	97.58	temperature	20	10	< th	dose dependent	rect.	8	2
134	97.60	wind	5	10	> th	dose independent	rect.	8	1
136	97.60	wind	5	10	> th	dose dependent	rect.	8	1
292	101.26	humidity	70	1440	< th	dose dependent	rect.	8	1
303	101.50	wind	1	10	< th	dose independent	rect.	6	4
306	101.52	wind	1	10	< th	dose dependent	rect.	8	15
321	101.84	humidity	60	1440	> th	dose independent	rect.	1	8
324	101.86	wind	1	10	< th	dose dependent	rect.	7	3
329	101.92	humidity	60	270	< th	dose independent	rect.	8	1
355	101.92	humidity	60	270	< th	dose dependent	rect.	8	1
381	101.93	humidity	60	90	< th	dose dependent	rect.	18	16
384	101.94	humidity	60	30	< th	dose independent	rect.	17	17
387	101.95	humidity	60	90	< th	dose independent	rect.	18	15
397	101.96	humidity	60	10	< th	dose dependent	rect.	17	18
398	101.97	humidity	60	30	< th	dose independent	rect.	9	1
444	101.97	humidity	60	10	< th	dose dependent	rect.	9	1
596	102.06	wind	1	10	< th	dose independent	rect.	8	2
600	102.10	humidity	60	4320	< th	dose independent	rect.	8	1
617	102.14	humidity	80	720	< th	dose independent	rect.	2	1
650	102.26	radiation	40	30	> th	dose dependent	rect.	9	1
827	102.74	wind	1	10	< th	dose independent	rect.	8	15
855	103.10	humidity	60	1440	> th	dose independent	rect.	8	1
899	103.43	wind	1	10	< th	dose independent	rect.	6	17
910	103.53	humidity	60	1440	> th	dose independent	rect.	20	13
977	103.85	wind	3	90	> th	dose dependent	rect.	5	2