Os05g0337200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os05g0337200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.39 | 0.685 | 3.66 | -0.453 | 0.755 | -1.29 | -0.359 | 1.55 | 0.0602 | 15.3 | 20.45 | 35 | -- | -- |
| 223.35 | 0.696 | 3.69 | -0.654 | 0.779 | -1.37 | 0.482 | -- | -0.0322 | 14.8 | 20.5 | 40 | -- | -- |
| 212.12 | 0.678 | 3.66 | -0.447 | 0.757 | -1.31 | -- | 1.49 | 0.062 | 15.2 | 20.4 | 40 | -- | -- |
| 223.31 | 0.696 | 3.69 | -0.74 | 0.783 | -1.38 | -- | -- | 0.000262 | 15.2 | 20.5 | 25 | -- | -- |
| 242.63 | 0.725 | 3.67 | -0.518 | -- | -1.09 | -- | 1.67 | -0.00136 | -- | 20.37 | 39 | -- | -- |
| 304 | 0.817 | 3.75 | -1.1 | 0.531 | -- | -0.00713 | -- | -0.266 | 16.4 | -- | -- | -- | -- |
| 304 | 0.816 | 3.75 | -1.1 | 0.531 | -- | -- | -- | -0.266 | 16.4 | -- | -- | -- | -- |
| 256.12 | 0.745 | 3.7 | -0.809 | -- | -1.16 | -- | -- | -0.0574 | -- | 20.5 | 23 | -- | -- |
| 236.69 | 0.717 | 3.68 | -- | 0.785 | -1.49 | -- | -- | 0.0874 | 15.1 | 20.4 | 40 | -- | -- |
| 319.12 | 0.835 | 3.75 | -1.12 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 335.8 | 0.857 | 3.73 | -- | 0.551 | -- | -- | -- | -0.144 | 16.3 | -- | -- | -- | -- |
| 273.12 | 0.77 | 3.68 | -- | -- | -1.3 | -- | -- | 0.0505 | -- | 20.42 | 40 | -- | -- |
| 352.16 | 0.876 | 3.72 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.49 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 3 | 214.94 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 23 |
| 6 | 215.82 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 22 |
| 15 | 217.30 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 17 | 217.56 | temperature | 20 | 10 | > th | dose independent | sin | 17 | NA |
| 24 | 218.48 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 41 | 221.46 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 46 | 221.60 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 50 | 221.84 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 52 | 221.93 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 54 | 222.06 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 57 | 222.19 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 58 | 222.20 | temperature | 20 | 10 | < th | dose independent | sin | 17 | NA |
| 59 | 222.20 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 60 | 222.29 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 23 |
| 65 | 222.53 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 70 | 222.63 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 92 | 223.29 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 100 | 223.72 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 14 |
| 137 | 225.30 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 149 | 225.92 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 159 | 226.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 188 | 227.51 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 191 | 227.54 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 220 | 228.25 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 244 | 228.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 245 | 228.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 255 | 229.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 277 | 229.42 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 278 | 229.44 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 324 | 230.10 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 23 |
| 342 | 230.29 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 358 | 230.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 359 | 230.49 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 376 | 230.66 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 379 | 230.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 413 | 231.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 437 | 231.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 6 |
| 460 | 231.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 6 |
| 470 | 231.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 481 | 231.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 510 | 232.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 513 | 232.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 648 | 232.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 671 | 233.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 714 | 233.25 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 740 | 233.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 748 | 233.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 764 | 233.50 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 15 |
| 942 | 234.40 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 23 |
| 947 | 234.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 971 | 234.56 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 20 |