BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0105800 Os11g0105800|AK110748
(274 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0105800 Phosphatidate cytidylyltransferase family protein 526 e-150
Os12g0105500 Phosphatidate cytidylyltransferase family protein 491 e-139
Os01g0832000 Phosphatidate cytidylyltransferase family protein 308 2e-84
Os04g0670700 Conserved hypothetical protein 96 2e-20
>Os11g0105800 Phosphatidate cytidylyltransferase family protein
Length = 274
Score = 526 bits (1355), Expect = e-150, Method: Compositional matrix adjust.
Identities = 260/274 (94%), Positives = 260/274 (94%)
Query: 1 MWILESPLLRDXXXXXXXXXXXXXXLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWP 60
MWILESPLLRD LRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWP
Sbjct: 1 MWILESPLLRDAGAAVLTGATALAVLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWP 60
Query: 61 LFSADDVYAPFLASLVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDRRELLKGPLYYACA 120
LFSADDVYAPFLASLVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDRRELLKGPLYYACA
Sbjct: 61 LFSADDVYAPFLASLVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDRRELLKGPLYYACA 120
Query: 121 ITLATVIFWRTSPISIAVICNLCAGDGVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGF 180
ITLATVIFWRTSPISIAVICNLCAGDGVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGF
Sbjct: 121 ITLATVIFWRTSPISIAVICNLCAGDGVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGF 180
Query: 181 LASILYMCYFHLFGFVEESWSMVIAFGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGV 240
LASILYMCYFHLFGFVEESWSMVIAFGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGV
Sbjct: 181 LASILYMCYFHLFGFVEESWSMVIAFGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGV 240
Query: 241 LVFYYTGARNLCCMSADSSDISALVQNQMVLDRF 274
LVFYYTGARNLCCMSADSSDISALVQNQMVLDRF
Sbjct: 241 LVFYYTGARNLCCMSADSSDISALVQNQMVLDRF 274
>Os12g0105500 Phosphatidate cytidylyltransferase family protein
Length = 280
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 241/271 (88%), Positives = 250/271 (92%)
Query: 4 LESPLLRDXXXXXXXXXXXXXXLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS 63
+ES +LRD LRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS
Sbjct: 10 MESQVLRDAGAAVLTGATALAVLRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFS 69
Query: 64 ADDVYAPFLASLVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDRRELLKGPLYYACAITL 123
ADDVYAPFLAS+VIAFNIIKVTLIGLGIVKDDGVINSMTRNGD RELLKGPLYYACA+TL
Sbjct: 70 ADDVYAPFLASIVIAFNIIKVTLIGLGIVKDDGVINSMTRNGDPRELLKGPLYYACAMTL 129
Query: 124 ATVIFWRTSPISIAVICNLCAGDGVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGFLAS 183
ATVIFWRTSPISIAVICNLCAGDGVADIAGR+ G +KLPYNPDKSYAGSIAMFLAGFLAS
Sbjct: 130 ATVIFWRTSPISIAVICNLCAGDGVADIAGRQLGRIKLPYNPDKSYAGSIAMFLAGFLAS 189
Query: 184 ILYMCYFHLFGFVEESWSMVIAFGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGVLVF 243
ILYMCYFHLFGFVEESW+MVIAFGVTSL+AAIVESLPISTRLDDNLTVPLASVL+GVLVF
Sbjct: 190 ILYMCYFHLFGFVEESWTMVIAFGVTSLSAAIVESLPISTRLDDNLTVPLASVLIGVLVF 249
Query: 244 YYTGARNLCCMSADSSDISALVQNQMVLDRF 274
YY GARNLCCMSADSSDISALVQNQM L RF
Sbjct: 250 YYIGARNLCCMSADSSDISALVQNQMFLGRF 280
>Os01g0832000 Phosphatidate cytidylyltransferase family protein
Length = 246
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/218 (66%), Positives = 176/218 (80%), Gaps = 1/218 (0%)
Query: 26 LRFWEEVGNRALLDQKLCRKLVHITVGLVYFLMWPLFSADDVYAPFLASLVIAFNIIKVT 85
LRF+EE+ R + +QKL RKLVHIT+G+V+ L WPLFS+ YAPFLA++ NII++
Sbjct: 30 LRFFEELAKRGVFEQKLNRKLVHITIGMVFLLFWPLFSSGS-YAPFLAAVAPGINIIRML 88
Query: 86 LIGLGIVKDDGVINSMTRNGDRRELLKGPLYYACAITLATVIFWRTSPISIAVICNLCAG 145
L+GLG++K++ ++ SM+R+GD RELLKGPLYYA IT AT IFWRTSPI+IA+ICNLCAG
Sbjct: 89 LLGLGVMKNEAMVKSMSRSGDPRELLKGPLYYATTITFATSIFWRTSPIAIALICNLCAG 148
Query: 146 DGVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGFLASILYMCYFHLFGFVEESWSMVIA 205
DG+ADI GRR G KLPYNP+KSYAGSIAM LAGF+ASI YM YF FGF+EESWS+
Sbjct: 149 DGIADIVGRRLGQEKLPYNPNKSYAGSIAMALAGFMASIGYMHYFQSFGFIEESWSLAFG 208
Query: 206 FGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGVLVF 243
F V S+ AA+VES PIST LDDNLTVPL S LVG LVF
Sbjct: 209 FLVVSVTAALVESHPISTHLDDNLTVPLTSFLVGSLVF 246
>Os04g0670700 Conserved hypothetical protein
Length = 104
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 5/108 (4%)
Query: 147 GVADIAGRRFGHVKLPYNPDKSYAGSIAMFLAGFLASILYMCYFHLFGFVEESWSMVIA- 205
G ADI GRR+G KLP+N +KS+ GSI+MF++GFL S L + YF G+ W + +
Sbjct: 1 GFADIVGRRYGSAKLPFNENKSWIGSISMFISGFLLSALMLFYFSCLGYFTVCWDLALGK 60
Query: 206 FGVTSLAAAIVESLPISTRLDDNLTVPLASVLVGVLVFYYTGARNLCC 253
+ +LAA +VE +P++ +DDN++VPLA++L L+F Y+ CC
Sbjct: 61 LALVALAATVVECIPVNDVVDDNISVPLATMLAAYLLFGYSS----CC 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.142 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,380,057
Number of extensions: 324705
Number of successful extensions: 776
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 4
Length of query: 274
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 175
Effective length of database: 11,866,615
Effective search space: 2076657625
Effective search space used: 2076657625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)