BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0103400 Os11g0103400|Os11g0103400
(551 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0103400 Zinc finger, RING-type domain containing protein 899 0.0
Os12g0102900 Zinc finger, RING-type domain containing protein 800 0.0
Os12g0631200 Zinc finger, RING-type domain containing protein 115 7e-26
Os08g0451800 Zinc finger, RING-type domain containing protein 83 6e-16
Os09g0420000 Zinc finger, RING-type domain containing protein 68 2e-11
>Os11g0103400 Zinc finger, RING-type domain containing protein
Length = 551
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/551 (80%), Positives = 446/551 (80%)
Query: 1 MSAADDXXXXXXXXXXXXXXXXXXXXXXXXFHLQLSEAIQXXXXXXXXXXXXXXXXXXXX 60
MSAADD FHLQLSEAIQ
Sbjct: 1 MSAADDLAALHHQVSLASSAALSASDHDLAFHLQLSEAIQASLSSNAAAPSHPAPPPPPP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXEQDHRDXXXXXXXXXXXXXXXXXXXXXXLFARDLAAIPED 120
EQDHRD LFARDLAAIPED
Sbjct: 61 EEPSDASCALAVHAADLARAEQDHRDAQACRAYHARAAASVRVAAHNALFARDLAAIPED 120
Query: 121 KWAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDRDPGVGVLAVAICGPRGEVVL 180
KWAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDRDPGVGVLAVAICGPRGEVVL
Sbjct: 121 KWAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDRDPGVGVLAVAICGPRGEVVL 180
Query: 181 RIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLNVLTDNKPLHNHMSGIWRPRQKR 240
RIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLNVLTDNKPLHNHMSGIWRPRQKR
Sbjct: 181 RIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLNVLTDNKPLHNHMSGIWRPRQKR 240
Query: 241 LVDLINEAFSAKQKFEQSEILCVARTQVNYVTKLATDSLHTQIAKAAVVSAGKEKKENCT 300
LVDLINEAFSAKQKFEQSEILCVARTQVNYVTKLATDSLHTQIAKAAVVSAGKEKKENCT
Sbjct: 241 LVDLINEAFSAKQKFEQSEILCVARTQVNYVTKLATDSLHTQIAKAAVVSAGKEKKENCT 300
Query: 301 ICLEDTDVSKIHAVEGCAHRFCFSCMKEHVKVKLLHGMLPACPQDGCTTKLNCGGFKDVP 360
ICLEDTDVSKIHAVEGCAHRFCFSCMKEHVKVKLLHGMLPACPQDGCTTKLNCGGFKDVP
Sbjct: 301 ICLEDTDVSKIHAVEGCAHRFCFSCMKEHVKVKLLHGMLPACPQDGCTTKLNCGGFKDVP 360
Query: 361 ISTVITDHGAAYQGSTNSSNSQDLLPISQVLSLDVHERTDTSNARIILKMTCYDYKRRYR 420
ISTVITDHGAAYQGSTNSSNSQDLLPISQVLSLDVHERTDTSNARIILKMTCYDYKRRYR
Sbjct: 361 ISTVITDHGAAYQGSTNSSNSQDLLPISQVLSLDVHERTDTSNARIILKMTCYDYKRRYR 420
Query: 421 HARLEDAYLQNLAQQRLWRQCIRCKHMIELAEGCYHMTCVCGYEFCYTCGKEWKEKKATC 480
HARLEDAYLQNLAQQRLWRQCIRCKHMIELAEGCYHMTCVCGYEFCYTCGKEWKEKKATC
Sbjct: 421 HARLEDAYLQNLAQQRLWRQCIRCKHMIELAEGCYHMTCVCGYEFCYTCGKEWKEKKATC 480
Query: 481 SCPLWDERNIIRDDPQGNAAIHXXXXXXXXXXXXXXXXXXXVGEGLQYNVDYHRQYDGGD 540
SCPLWDERNIIRDDPQGNAAIH VGEGLQYNVDYHRQYDGGD
Sbjct: 481 SCPLWDERNIIRDDPQGNAAIHDDPEDEYDDYYDEDENNYYVGEGLQYNVDYHRQYDGGD 540
Query: 541 RHHGHFYQYNR 551
RHHGHFYQYNR
Sbjct: 541 RHHGHFYQYNR 551
>Os12g0102900 Zinc finger, RING-type domain containing protein
Length = 515
Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/443 (88%), Positives = 393/443 (88%), Gaps = 24/443 (5%)
Query: 109 LFARDLAAIPEDKWAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDRDPGVGVLA 168
LFARDLAAIPED+WAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDRDPGVGVLA
Sbjct: 97 LFARDLAAIPEDRWAHDGDYFERPLPLEGGGALFRVLFKGMASREVVGPRDRDPGVGVLA 156
Query: 169 VAICGPRGEVVLRIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLNVLTDNKPLHN 228
VAICGPRGEVVLRIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLNVLTDNKPLHN
Sbjct: 157 VAICGPRGEVVLRIHKPVQAQAQQGRMMLEAMALVEGLNAALALGIRTLNVLTDNKPLHN 216
Query: 229 HMSGIWRPRQKRLVDLINEAFSAKQKFEQSEILCVARTQVNYVTKLATDSLHTQIAKAAV 288
HMSGIWRPRQKRLVDLINEAFS KQKFEQ EILCVARTQVNYVTKLATDSLHTQIAKAA
Sbjct: 217 HMSGIWRPRQKRLVDLINEAFSTKQKFEQCEILCVARTQVNYVTKLATDSLHTQIAKAAA 276
Query: 289 VSAGKEKKENCTICLEDTDVSKIHAVEGCAHRFCFSCMKEHVKVKLLHGMLPACPQDGCT 348
VSAGKEKKENCTICLEDTDVSKIHAVEGCAHRFCFSCMKE VKVKLLHGMLPACPQDGCT
Sbjct: 277 VSAGKEKKENCTICLEDTDVSKIHAVEGCAHRFCFSCMKERVKVKLLHGMLPACPQDGCT 336
Query: 349 TKLNCGGFKDVPISTVITDHGAAYQGSTNSSNSQDLLPISQVLSLDVHERTDTSNARIIL 408
TKLNCGGFKDVPISTVI+DHGAAYQGSTNSSNSQDLLPISQV SLDVHERTDTSNA IIL
Sbjct: 337 TKLNCGGFKDVPISTVISDHGAAYQGSTNSSNSQDLLPISQVFSLDVHERTDTSNASIIL 396
Query: 409 KMTCYDYKRRYRHARLEDAYLQNLAQQRLWRQCIRCKHMIELAEGCYHMTCVCGYEFCYT 468
KMTCYDYKRRY HARLEDAYLQNLA+QR CGYEFCYT
Sbjct: 397 KMTCYDYKRRYPHARLEDAYLQNLARQR------------------------CGYEFCYT 432
Query: 469 CGKEWKEKKATCSCPLWDERNIIRDDPQGNAAIHXXXXXXXXXXXXXXXXXXXVGEGLQY 528
CGKEWKEKKATCSCPLWDERNIIRDDPQGNAAIH VGEGLQY
Sbjct: 433 CGKEWKEKKATCSCPLWDERNIIRDDPQGNAAIHDDPEDEYDDYYDEDENNYYVGEGLQY 492
Query: 529 NVDYHRQYDGGDRHHGHFYQYNR 551
NVDYHRQYDGGDRHHGHFYQYNR
Sbjct: 493 NVDYHRQYDGGDRHHGHFYQYNR 515
>Os12g0631200 Zinc finger, RING-type domain containing protein
Length = 510
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 175/380 (46%), Gaps = 52/380 (13%)
Query: 143 RVLFKGMASREVVGPRDRDPGVGVLAVAICGPRGEVVLRIHKPVQAQAQQGRMMLEAMAL 202
R+ FKG++S E G + G+GV+ G +L++ K + + ++ + +AL
Sbjct: 54 RLFFKGVSSPEAEGKKLS--GIGVVMER---SPGVPMLQVQKKLDFYVDE--LVADHLAL 106
Query: 203 VEGLNAALALGIRTLNVLTDNKPLHNHMSGIWRPRQKRLVDLINEAFSAKQKFEQSEILC 262
++GL AL GIR + T+++ L+ ++ + LV L + +K E +I+
Sbjct: 107 MDGLLVALQNGIRKIFAFTNSEKLYFQIAEAEILEDQLLVALGHRILELVEKLEDFDIIL 166
Query: 263 VARTQVNYVTKLATDSLHTQIAKAAVVSAGKEKKENCTICLEDTDVSKIHAVEGCAHRFC 322
+ ++ +LA +++ ++ + C+IC E+ +++ V GCAH FC
Sbjct: 167 LPSFELERPLQLAKEAI-------GIMYLSPYEVGTCSICCEEKRGAQMIKV-GCAHTFC 218
Query: 323 FSCMKEHVKVKLLHGMLPA-CPQDGCTTKLNCGGFKD-VPISTVITDHGAAYQGSTNS-- 378
+SC+ + + KL +P CPQ C ++ K +P+S + A + T+
Sbjct: 219 YSCLTSYTQEKLQTNKVPIRCPQLRCKYHISASECKSFLPVSCYDSLERAFAEAGTSDME 278
Query: 379 ------SNSQDLLPISQVLSLDVHERTDTSNARII---------------------LKMT 411
N LL +SQ S R TS+ + + M
Sbjct: 279 RFYCPFPNCSVLLDLSQHFS-----RASTSSQSDLNCVECPECHRDICINCGVPWHVMMG 333
Query: 412 CYDYKRRYRHAR-LEDAYLQNLAQQRLWRQCIRCKHMIELAEGCYHMTCVCGYEFCYTCG 470
C +Y+ R D L LAQ WR+C RC+ MIEL +GC+HM C CG+EFCY+CG
Sbjct: 334 CDEYQSLPVDERDAGDLSLHRLAQNNRWRRCQRCRRMIELTQGCFHMNCWCGHEFCYSCG 393
Query: 471 KEWKEKKATCSCPLWDERNI 490
E+ TC C WDE +I
Sbjct: 394 AEYTNGIQTCQCVFWDEESI 413
>Os08g0451800 Zinc finger, RING-type domain containing protein
Length = 315
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 19/202 (9%)
Query: 299 CTICLEDTDVSKIH-AVEGCAHRFCFSCMKEHVKVKLLHGMLPA-CPQDGCTTKLNCGGF 356
C IC++ S H A GC H FC +C+ +V K+ + CP++ C L+
Sbjct: 112 CKICMDAVPPSAAHRASRGCDHAFCAACLAGYVGAKIQERIADVRCPEERCRGALDPELC 171
Query: 357 KDVPISTVITDHGAAYQGSTNSSNSQDLLPIS--QVLSLD-----VHERTDTSNARIILK 409
+ + V GAA + + + P + LD V E S R+
Sbjct: 172 QGILPREVFDRWGAALCEAMVLAAPRAYCPFKDCSAMMLDDAGEAVTESECPSCRRLFCA 231
Query: 410 ---------MTCYDYKRRYRHAR-LEDAYLQNLAQQRLWRQCIRCKHMIELAEGCYHMTC 459
+ C YK+ + R ED + +A+ + W++C +CK+ +E ++GC H+TC
Sbjct: 232 QCAVPWHAGVDCAAYKKLGKGDRGKEDLLVVEMAKGKKWKRCPKCKYFVEKSQGCLHITC 291
Query: 460 VCGYEFCYTCGKEWKEKKATCS 481
CG+EFCY CG +W A+CS
Sbjct: 292 RCGFEFCYGCGGQWGVTHASCS 313
>Os09g0420000 Zinc finger, RING-type domain containing protein
Length = 328
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 24/197 (12%)
Query: 298 NCTICLEDTDVSKIHAVEGCAHRFCFSCMKEHVKVKLLHGMLP-ACPQDGCTT-KLNCGG 355
C IC++ S+ V C+H FC SC+ +V K+ + CP GC + G
Sbjct: 117 TCIICMDKVQASEEFLVNVCSHAFCKSCIGGYVAAKVSDNVAAIGCPDPGCEEGSVEIGQ 176
Query: 356 FKDVPISTVITDHGAAYQGSTNSSNSQDLLPISQVLSLDVHERTDTSNARIILKMTCYDY 415
+D+ + + S+ ++ P ++ +++ D +A I + C
Sbjct: 177 CRDIVPPELFGRWSVSLWESSMGETTKCYCPFKDCSAMLINDNGDGGDAEEIAETECPHC 236
Query: 416 KRRY-RHARL---------------------EDAYLQNLAQQRLWRQCIRCKHMIELAEG 453
R + R+ ED L+ LA ++ W++C +C+ +E + G
Sbjct: 237 HRMFCASCRVPWHDGIDCKEFRKLGNDEKGKEDLMLKKLAGKKKWQRCPQCRMYVEKSAG 296
Query: 454 CYHMTCVCGYEFCYTCG 470
C M C CG+ FCY C
Sbjct: 297 CTFMRCRCGFFFCYNCA 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,847,744
Number of extensions: 618238
Number of successful extensions: 1558
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1547
Number of HSP's successfully gapped: 5
Length of query: 551
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 445
Effective length of database: 11,501,117
Effective search space: 5117997065
Effective search space used: 5117997065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)