Os11g0103400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os11g0103400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.78 | 0.594 | 8.13 | 2.93 | 1.39 | -1.68 | -0.992 | 4.9 | 0.192 | 22.8 | 10.44 | 5689 | -- | -- |
| 178.46 | 0.622 | 8.26 | 2.49 | 1.46 | -2.15 | -0.556 | -- | 0.207 | 22.7 | 11.76 | 11038 | -- | -- |
| 163.66 | 0.596 | 8.12 | 3.01 | 1.39 | -1.69 | -- | 4.98 | 0.22 | 22.7 | 9.761 | 5893 | -- | -- |
| 179.93 | 0.625 | 8.25 | 2.26 | 1.43 | -2.09 | -- | -- | 0.155 | 22.8 | 7.362 | 11155 | -- | -- |
| 258.82 | 0.753 | 8.19 | 2.32 | -- | -2.28 | -- | 6.83 | 0.0327 | -- | 9.761 | 5893 | -- | -- |
| 245.45 | 0.734 | 8.41 | 0.922 | 1.36 | -- | -1.06 | -- | -0.524 | 22.7 | -- | -- | -- | -- |
| 250.11 | 0.741 | 8.41 | 0.965 | 1.37 | -- | -- | -- | -0.521 | 22.6 | -- | -- | -- | -- |
| 298.52 | 0.808 | 8.31 | 1.38 | -- | -2.15 | -- | -- | -0.227 | -- | 9.761 | 5893 | -- | -- |
| 244.99 | 0.729 | 8.39 | -- | 1.41 | -0.844 | -- | -- | -0.449 | 22.6 | 28.22 | 7753 | -- | -- |
| 365.45 | 0.893 | 8.37 | 0.991 | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
| 274.67 | 0.775 | 8.43 | -- | 1.38 | -- | -- | -- | -0.628 | 22.7 | -- | -- | -- | -- |
| 346.05 | 0.869 | 8.35 | -- | -- | -1.72 | -- | -- | -0.43 | -- | 9.761 | 5893 | -- | -- |
| 391.33 | 0.923 | 8.4 | -- | -- | -- | -- | -- | -0.624 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.16 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 4 | 145.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 17 |
| 9 | 145.49 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 16 | 145.57 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 17 | 145.58 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 28 | 145.71 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 31 | 145.73 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 51 | 145.98 | wind | 7 | 43200 | < th | dose dependent | sin | 3 | NA |
| 81 | 146.21 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 181 | 147.04 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 200 | 147.22 | wind | 3 | 43200 | > th | dose independent | sin | 3 | NA |
| 203 | 147.24 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 206 | 147.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 213 | 147.32 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 228 | 147.45 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 239 | 147.51 | wind | 3 | 43200 | < th | dose independent | sin | 4 | NA |
| 247 | 147.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 16 | 22 |
| 278 | 147.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 283 | 147.70 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 296 | 147.78 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 298 | 147.79 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 313 | 147.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 339 | 147.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 21 |
| 342 | 147.98 | wind | 9 | 43200 | < th | dose dependent | no | NA | NA |
| 351 | 148.00 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 394 | 148.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 428 | 148.19 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 430 | 148.20 | wind | 1 | 43200 | > th | dose dependent | no | NA | NA |
| 439 | 148.23 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 492 | 148.42 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 496 | 148.43 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 543 | 148.66 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 551 | 148.69 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 637 | 149.01 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 642 | 149.05 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 703 | 149.33 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 905 | 150.15 | radiation | 20 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 933 | 150.21 | radiation | 20 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 966 | 150.32 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 12 |