BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0561900 Os10g0561900|AK101939
(362 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0561900 Dual specificity protein phosphatase domain co... 617 e-177
Os01g0739200 Dual specificity protein phosphatase domain co... 267 9e-72
Os05g0524200 Dual specificity protein phosphatase domain co... 263 2e-70
Os06g0152000 Conserved hypothetical protein 112 3e-25
>Os10g0561900 Dual specificity protein phosphatase domain containing protein
Length = 362
Score = 617 bits (1592), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/311 (96%), Positives = 299/311 (96%)
Query: 52 FDAKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKEL 111
FDAKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKEL
Sbjct: 52 FDAKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKEL 111
Query: 112 GVCGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGK 171
GVCGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGK
Sbjct: 112 GVCGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGK 171
Query: 172 LTYVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLR 231
LTYVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLR
Sbjct: 172 LTYVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLR 231
Query: 232 VKKSGKSICLDSPIMKPPLFLATRNLIAFDEKTFVMVSKSDLEGYDADTLAVNVGSGLWE 291
VKKSGKSICLDSPIMKPPLFLATRNLIAFDEKTFVMVSKSDLEGYDADTLAVNVGSGLWE
Sbjct: 232 VKKSGKSICLDSPIMKPPLFLATRNLIAFDEKTFVMVSKSDLEGYDADTLAVNVGSGLWE 291
Query: 292 ISLVYRVXXXXXXXXXXXXYLWVRCRAPRKNKEALPVPESNNSVGSESCSLEAEQLAKPH 351
ISLVYRV YLWVRCRAPRKNKEALPVPESNNSVGSESCSLEAEQLAKPH
Sbjct: 292 ISLVYRVQFASQAAFAGFSYLWVRCRAPRKNKEALPVPESNNSVGSESCSLEAEQLAKPH 351
Query: 352 PCLLQGVMVNP 362
PCLLQGVMVNP
Sbjct: 352 PCLLQGVMVNP 362
>Os01g0739200 Dual specificity protein phosphatase domain containing protein
Length = 341
Score = 267 bits (683), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/225 (57%), Positives = 166/225 (73%), Gaps = 15/225 (6%)
Query: 52 FDAKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKEL 111
AKRA VG GAR+LFYPTL+YNV+RNRFE F WWD+VD+++LLGAVPFPSDV RLK+L
Sbjct: 38 LSAKRALVGAGARVLFYPTLLYNVLRNRFEAEFRWWDRVDQYILLGAVPFPSDVPRLKQL 97
Query: 112 GVCGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGK 171
GV GVVTLNE+YE LVP LY+AHGI++L++PTRDYL+AP+ +++C+A DFIHRNA G
Sbjct: 98 GVQGVVTLNEAYETLVPTSLYQAHGIDHLIIPTRDYLFAPALQDICQAIDFIHRNASEGG 157
Query: 172 LTYVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLR 231
+TYVHCKAGRGRSTT+VLCYL++Y+ M+P A +HVR RPRVLLA +Q QAV F L
Sbjct: 158 ITYVHCKAGRGRSTTIVLCYLIKYRSMSPEAALDHVRSIRPRVLLAPSQWQAVNVFSTLT 217
Query: 232 VKKSGKSICLDSPIMKPPLFLATRNLIAFDEKTFVMVSKSDLEGY 276
+ L + ++NL F E ++ S+++ Y
Sbjct: 218 TGR---------------LPIQSKNLGHFLEAGDDCITNSEIDDY 247
>Os05g0524200 Dual specificity protein phosphatase domain containing protein
Length = 377
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 123/180 (68%), Positives = 146/180 (81%)
Query: 54 AKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKELGV 113
AKRA VG GAR+LFYPTL+YNV+RNRFE F WWD++D++VLLGAVPF SDV LK+LGV
Sbjct: 44 AKRALVGAGARVLFYPTLLYNVLRNRFESEFRWWDRIDQYVLLGAVPFSSDVPHLKQLGV 103
Query: 114 CGVVTLNESYERLVPRCLYEAHGIENLVLPTRDYLYAPSFENLCRAADFIHRNALCGKLT 173
GVVTLNESYE LVP LY+AHGI +L +PTRDYL+APS E++C+A DFIHRNA G T
Sbjct: 104 RGVVTLNESYETLVPTSLYQAHGINHLEIPTRDYLFAPSLEDICQAVDFIHRNASQGGST 163
Query: 174 YVHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFYQLRVK 233
YVHCKAGRGRSTT+VLCYL++Y+ MTP A +H R RPRVLLA +Q QAV+ F L +
Sbjct: 164 YVHCKAGRGRSTTIVLCYLIKYRNMTPEAALDHARSVRPRVLLAPSQWQAVKLFSNLNTR 223
>Os06g0152000 Conserved hypothetical protein
Length = 115
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 64/82 (78%)
Query: 54 AKRAAVGVGARMLFYPTLVYNVVRNRFEPHFHWWDQVDEHVLLGAVPFPSDVLRLKELGV 113
AK AAVG AR LFYPTL+YNVVR++ + F WWD+VD+ +LLGAVPF DV RL++LGV
Sbjct: 33 AKEAAVGAMARALFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRLQKLGV 92
Query: 114 CGVVTLNESYERLVPRCLYEAH 135
GV+TLNE +E LVP +Y+A
Sbjct: 93 YGVITLNEPFETLVPSSMYQAS 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,804,586
Number of extensions: 411777
Number of successful extensions: 680
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 4
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)