BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0550000 Os10g0550000|AK065729
(901 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0550000 Conserved hypothetical protein 1823 0.0
Os03g0106200 Conserved hypothetical protein 692 0.0
Os04g0559200 Conserved hypothetical protein 241 1e-63
>Os10g0550000 Conserved hypothetical protein
Length = 901
Score = 1823 bits (4722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/901 (97%), Positives = 882/901 (97%)
Query: 1 MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN
Sbjct: 1 MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
Query: 61 SSDFVETXXXXXNKEECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYDVSLD 120
SSDFVET NKEECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYDVSLD
Sbjct: 61 SSDFVETDDDDDNKEECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYDVSLD 120
Query: 121 GGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIYRCHG 180
GGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIYRCHG
Sbjct: 121 GGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIYRCHG 180
Query: 181 ECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENSRSNSRAA 240
ECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENSRSNSRAA
Sbjct: 181 ECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENSRSNSRAA 240
Query: 241 QFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLEPDKSLGRSSILEE 300
QFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLEPDKSLGRSSILEE
Sbjct: 241 QFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLEPDKSLGRSSILEE 300
Query: 301 KRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSKIVILKPNQGRRIDET 360
KRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSKIVILKPNQGRRIDET
Sbjct: 301 KRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSKIVILKPNQGRRIDET 360
Query: 361 ETTSSRYLHQQPCTSQAPEFSGRESSKFSIKEVRRRFKIVTGDSKREKNAIPAENLPGDS 420
ETTSSRYLHQQPCTSQAPEFSGRESSKFSIKEVRRRFKIVTGDSKREKNAIPAENLPGDS
Sbjct: 361 ETTSSRYLHQQPCTSQAPEFSGRESSKFSIKEVRRRFKIVTGDSKREKNAIPAENLPGDS 420
Query: 421 HQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKPXXXXXXXXXXXXXXEISDHTTGASI 480
HQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKP EISDHTTGASI
Sbjct: 421 HQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKPSASSKQKQQNDSQSEISDHTTGASI 480
Query: 481 FYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRSDHRGKCHNAFSPE 540
FYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRSDHRGKCHNAFSPE
Sbjct: 481 FYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRSDHRGKCHNAFSPE 540
Query: 541 EPEVCLVKAVDVEEPAQERSQLHDNSESNAYSTSVAVDDQVAVLEECGIKEDTQEGIIYA 600
EPEVCLVKAVDVEEPAQERSQLHDNSESNAYSTSVAVDDQVAVLEECGIKEDTQEGIIYA
Sbjct: 541 EPEVCLVKAVDVEEPAQERSQLHDNSESNAYSTSVAVDDQVAVLEECGIKEDTQEGIIYA 600
Query: 601 TDEVDTVPVEGVGKLDCSKTICNIQCIPAEQYTDSPLPEILEGTEGKEPVQMFMSSPESM 660
TDEVDTVPVEGVGKLDCSKTICNIQCIPAEQYTDSPLPEILEGTEGKEPVQMFMSSPESM
Sbjct: 601 TDEVDTVPVEGVGKLDCSKTICNIQCIPAEQYTDSPLPEILEGTEGKEPVQMFMSSPESM 660
Query: 661 VENLEQQDPKTPEPKSSPKLPDGCPEQSNEKKEQPSPVSVLDSFDEDDSSPECKTMKKYE 720
VENLEQQDPKTPEPKSSPKLPDGCPEQSNEKKEQPSPVSVLDSFDEDDSSPECKTMKKYE
Sbjct: 661 VENLEQQDPKTPEPKSSPKLPDGCPEQSNEKKEQPSPVSVLDSFDEDDSSPECKTMKKYE 720
Query: 721 LHEVSCGTLYFPDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWYLEDELISPC 780
LHEVSCGTLYFPDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWYLEDELISPC
Sbjct: 721 LHEVSCGTLYFPDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWYLEDELISPC 780
Query: 781 MFEELQNQGDRIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEV 840
MFEELQNQGDRIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEV
Sbjct: 781 MFEELQNQGDRIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEV 840
Query: 841 DKYVDGYLKCSFPSTLEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDELIDEAVFDLW 900
DKYVDGYLKCSFPSTLEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDELIDEAVFDLW
Sbjct: 841 DKYVDGYLKCSFPSTLEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDELIDEAVFDLW 900
Query: 901 I 901
I
Sbjct: 901 I 901
>Os03g0106200 Conserved hypothetical protein
Length = 879
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/910 (46%), Positives = 555/910 (60%), Gaps = 40/910 (4%)
Query: 1 MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
MG+RS + + QE N+GC+WGL+ MLYFRRDAKFLLD KQ SRRHTF L+ RHS K
Sbjct: 1 MGKRSQRLARRQE--NIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKK 58
Query: 61 SSDFVETXXX-XXNKEECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYDVSL 119
S DF ET N EEC ++K+TVK+LMEDELGKV +KKIP E+QR L DLG+DV L
Sbjct: 59 SRDFEETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADLGHDVCL 118
Query: 120 DGGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIYRCH 179
+ S + K A + T + SG + GSKS+ +EE DLE LA+F+GE+Y H
Sbjct: 119 EKSSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYH 178
Query: 180 GECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENSRSNSRA 239
DCKNK ELCP LKS IH KL++L + E+SP+ E NSR+
Sbjct: 179 D-----DCKNKSELCPELKSHIHTKLSELKSVPCQRAYEESPDWGQREHFYEKYICNSRS 233
Query: 240 AQFKEFKDAVEILSSNNELFLKLLQKPNSHILD--NIRKYQNSRLTTKLEPDKSLGRSSI 297
Q + DA ++LS ELFLK LQKP+ H L+ N + QN ++ TKLEP K L +
Sbjct: 234 YQSNKLVDAPDMLSPEKELFLKTLQKPSPHTLEKENTQNNQNRQVVTKLEPRKILEKGE- 292
Query: 298 LEEKRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSKIVILKPNQGRRI 357
K HE+A K KE +++FFWRKD+S K E N + V+KIVILKPN R I
Sbjct: 293 -NTKNSKQHEVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNSSKMVNKIVILKPN-PRGI 350
Query: 358 DETETTSSRYLHQQPCTSQAPEFSGRESSKFSIKEVRRRFKIVTGDSKREKNAIPAENLP 417
D T T+S L QQ CT Q+P++ ESSKFSIKEVRRRFKIVTGD++R + ++ ++L
Sbjct: 351 DTTVATASTCLDQQSCTIQSPKYPATESSKFSIKEVRRRFKIVTGDTRRGRPSVYEDDLQ 410
Query: 418 GDSHQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKPXXXXXXXXXXXXXXEISDH--- 474
DS ++ DSV + + D S+ K+ ++P EI+
Sbjct: 411 RDSQRINDSVFKVRK----------DSKQSD-KDNLRPLTSGKQKQRNDGLGEINGDIIT 459
Query: 475 TTGASIFYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRSDHRGKCH 534
+ SIFYE+AKKHL D+L+ S + +PT SKSL GMLS P N S PRS R K
Sbjct: 460 SKDTSIFYEEAKKHLTDILEYNSHTTKHPTVHTSKSLIGMLSLPQRNASSPRSSPRLKGR 519
Query: 535 NAFSPEEPEVCLVKAVDVEEPAQERSQLHDNSESNAYSTSVAVDDQVAVLEECGIKEDTQ 594
SPEE + ++ + E A+ER ++S S A S +D + +E Q
Sbjct: 520 IDLSPEEINISAIQQDERTEYAKERDLSDEDSGSVACGNSEVLDGKADQDRHSMKQETAQ 579
Query: 595 EGIIYATDEVDTVPVEGVGKLDCSKTICNIQCIPAEQYTDSPLPEILEGTE-GKEPVQMF 653
+G I +E+D K CS+TIC+ EQ T + E++EG E G+E M
Sbjct: 580 DGDIMHIEEID--------KPACSETICSEGITLKEQCTCTSSLELIEGAEPGREHAGML 631
Query: 654 MSSPESMVENLEQQDPKTPEPKSSPKLPDGC-PEQSNEKKEQPSPVSVLDSFD-EDDSSP 711
+S PE++VE+LE Q+PKTP +S +L PE ++EK+EQPSPVSVLD F ED SP
Sbjct: 632 LSYPENVVESLEHQEPKTPRSSASLELISQISPEGNHEKQEQPSPVSVLDPFFCEDVDSP 691
Query: 712 ECKTMKKYELHEVSCGTLYFPDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWY 771
+ +TM K E+H+ + PD S VFWED++ARL YI +LELSELC QNLEVWY
Sbjct: 692 DHETMIKCEMHQ-DMMRPHIPDAISDQWVFWEDEDARLSYIKAMLELSELCTYQNLEVWY 750
Query: 772 LEDELISPCMFEELQNQGDRIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPP 831
LEDELISPCM EEL +QG++ DD+K+ FDCICEA+T IQE YFR LSF+ H I+ PP
Sbjct: 751 LEDELISPCMIEEL-HQGNQTDDLKLPFDCICEAITIIQETYFRNPPCLSFLMHKIQPPP 809
Query: 832 VGEKLISEVDKYVDGYLKCSFPSTLEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDEL 891
+GE LI E++K+++ +L FP TL Q++ DLE WM+++ ++E I+V+ WEF+LDEL
Sbjct: 810 MGENLIQEINKHIERHLHNQFPRTLNQLVNIDLEDGTWMNLQLESEEIIVDTWEFILDEL 869
Query: 892 IDEAVFDLWI 901
++E DL I
Sbjct: 870 LEEVANDLLI 879
>Os04g0559200 Conserved hypothetical protein
Length = 864
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 259/951 (27%), Positives = 420/951 (44%), Gaps = 142/951 (14%)
Query: 1 MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
M ++S+K+ + E+ ++GC+ GL+ M FRR K + D RR + R +K
Sbjct: 6 MAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISDG--TIRRSSVRS------DLKG 57
Query: 61 SSDFVETXXXXXNKE----ECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYD 116
S DF +K+ + + ++K LME+E+ + K E QR
Sbjct: 58 SEDFHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILK----ETQR-------- 105
Query: 117 VSLDGGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIY 176
+IF + S KS+N E D++ LA L E+Y
Sbjct: 106 ---------------------NIFG------IRSDDLKSVNLQEGSDVDLDLATSLMELY 138
Query: 177 RCHGECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENS--- 233
R H + SL HN + + E++ E+ E ++ S
Sbjct: 139 RNHNGSRDIITSEVSDHSSSLIDKEHNTDASTHPKQISCSIEKALEAVAEAVITHQSANG 198
Query: 234 --RSNSRAAQFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLE--PD 289
S+S A+ EF DA+++LS+N E FL LL+ P+S +L ++ + LE D
Sbjct: 199 KYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQCLQNLYTALGNPMLELAED 258
Query: 290 KSLGRSSI----LEEKRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSK 345
+S + LE+ S + + + H FF ++D+ ++ P+ + P+ VS+
Sbjct: 259 DKQTKSKVTINSLEQSEVSKYSV-------QKTHNFFLKEDKLVMRRPPKLNDSPRGVSR 311
Query: 346 IVILKPNQGRRIDETET---------TSSRYLHQQPCTSQAPEFSGRESSKFSIKEVRRR 396
IVILKP+ GR + T + Q+ A FS RE + +
Sbjct: 312 IVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLRELKRRLRLAISNN 371
Query: 397 FKIVTGDSKREKNAIPAENLPGDSHQLKDSVVEDKD-PRHLTEGSLPDKAASNFKNGIKP 455
K V + ++ ++ L S + S E + P + + ++P+ + S N
Sbjct: 372 RKDVMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPEDSGSGMGN---- 427
Query: 456 XXXXXXXXXXXXXXEISDHT-TGASIFYEKAKKHLADMLKN----TSQSA--SYPTAQV- 507
D T +S FYEKAKKHL + L N TSQ S P ++
Sbjct: 428 -----------------DATHCASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEPFGKLL 470
Query: 508 SKSLEGMLSQ---PHYNVSPPRSDHRGKCHNAFSPEEPEVCLVKAVDVEEPAQ--ERSQL 562
S S SQ P +V S+ + E+ ++ + + + P + E L
Sbjct: 471 SYSENDTFSQTDCPQEDVK--LSEDSTASSALLTTEQEDI----SSNSDPPMKFGELIPL 524
Query: 563 HDNSESNAYSTSVAVDDQVAVLEECGIKED-TQEGIIYATDEVDT--VPVEGVGKLDCSK 619
++ +N D ++E I ++ T EGI D DT V ++ + +
Sbjct: 525 DTSTSANTQLDEFKTDHASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLE 584
Query: 620 TICNIQCIPAEQYTDSPLPEILEGTEGKEPVQMFMSSPESMVENLEQQDPKTPEPKSSPK 679
I QC E T + LPE+ T K Q F SP ++V K S
Sbjct: 585 QINTDQCFAEESQTMNALPEVSLHTPEKVNEQ-FNHSPSAVV----------GLTKPSIL 633
Query: 680 LPDGCPEQSNEKKEQPSPVSVLDSFDEDDSSPECKTMKKYELHEVSCGTLYFPDNE-SGV 738
PE +++K+E+ SP SVLDSF D SP KT + EL S L+ D+ SG
Sbjct: 634 TFSCSPENADDKEERLSPQSVLDSFLGDGISPSHKTRTQDELSMPSTRILFKEDDTPSGT 693
Query: 739 --------KVFWEDKNARLDYIMLVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGD 790
+ +DK ARL +I +VLE S+ +E++ E+WY++ L+ + E+
Sbjct: 694 PTLQNTPQEAILDDKQARLSFIKVVLEASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYC 753
Query: 791 RIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEVDKYVDGYLKC 850
DD LFDC+ EAL +I++ +F W++++KH +R PVG LI EVD +D +
Sbjct: 754 LTDDAVFLFDCVEEALCKIRDNFFGCDPWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSD 813
Query: 851 SFPSTLEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDELIDEAVFDLWI 901
PSTL++++ +DLE +WMD+R TE + +E+W+ +LD+L++E VFDLW+
Sbjct: 814 EVPSTLDRVVLKDLESGSWMDLRVDTEEVAIEVWDTLLDDLLEEMVFDLWL 864
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,195,396
Number of extensions: 1371282
Number of successful extensions: 3316
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3297
Number of HSP's successfully gapped: 3
Length of query: 901
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 791
Effective length of database: 11,292,261
Effective search space: 8932178451
Effective search space used: 8932178451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)