Os04g0559200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0559200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.88 | 0.373 | 8.46 | -1.49 | 0.726 | 0.806 | 0.258 | -1.69 | 0.125 | 4.9 | 31.2 | 1284 | -- | -- |
| 63.16 | 0.37 | 8.43 | -1.24 | 0.752 | 0.619 | 0.274 | -- | 0.108 | 4.86 | 31.63 | 1326 | -- | -- |
| 63.04 | 0.37 | 8.46 | -1.49 | 0.728 | 0.805 | -- | -1.65 | 0.124 | 4.95 | 31.21 | 1286 | -- | -- |
| 63.14 | 0.37 | 8.43 | -1.21 | 0.724 | 0.619 | -- | -- | 0.125 | 4.95 | 31.1 | 1274 | -- | -- |
| 90.49 | 0.443 | 8.43 | -1.22 | -- | 0.698 | -- | -0.0599 | 0.147 | -- | 31.11 | 1233 | -- | -- |
| 81.35 | 0.423 | 8.45 | -1.05 | 0.779 | -- | 0.456 | -- | 0.00927 | 4.53 | -- | -- | -- | -- |
| 81.88 | 0.424 | 8.45 | -1.06 | 0.783 | -- | -- | -- | 0.00692 | 4.62 | -- | -- | -- | -- |
| 90.46 | 0.443 | 8.43 | -1.21 | -- | 0.694 | -- | -- | 0.158 | -- | 30.86 | 1252 | -- | -- |
| 100.55 | 0.467 | 8.41 | -- | 0.717 | 0.463 | -- | -- | 0.217 | 4.9 | 32.92 | 1249 | -- | -- |
| 114.52 | 0.5 | 8.46 | -1.03 | -- | -- | -- | -- | 0.0274 | -- | -- | -- | -- | -- |
| 111.22 | 0.493 | 8.43 | -- | 0.764 | -- | -- | -- | 0.124 | 4.65 | -- | -- | -- | -- |
| 127.4 | 0.526 | 8.41 | -- | -- | 0.537 | -- | -- | 0.252 | -- | 31.9 | 1229 | -- | -- |
| 142.24 | 0.557 | 8.43 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.52 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 2 | 61.56 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 31 | 62.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 32 | 62.20 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 33 | 62.21 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 44 | 62.28 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 59 | 62.38 | humidity | 70 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 85 | 62.42 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 15 |
| 86 | 62.45 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 112 | 62.54 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 118 | 62.60 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 124 | 62.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 155 | 62.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 156 | 62.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 158 | 62.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 174 | 62.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 179 | 62.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 201 | 62.99 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 218 | 63.03 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 219 | 63.04 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 279 | 63.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 305 | 63.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 306 | 63.36 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 315 | 63.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 462 | 63.72 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 562 | 63.85 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 577 | 63.86 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 673 | 63.87 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 698 | 63.96 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 730 | 64.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 809 | 64.12 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 816 | 64.15 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 869 | 64.23 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 894 | 64.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |