BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0559200 Os04g0559200|AK066088
(864 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0559200 Conserved hypothetical protein 1775 0.0
Os10g0550000 Conserved hypothetical protein 268 1e-71
Os03g0106200 Conserved hypothetical protein 236 8e-62
>Os04g0559200 Conserved hypothetical protein
Length = 864
Score = 1775 bits (4597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 864/864 (100%), Positives = 864/864 (100%)
Query: 1 MFSSIMAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISDGTIRRSSVRSDLKGSED 60
MFSSIMAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISDGTIRRSSVRSDLKGSED
Sbjct: 1 MFSSIMAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISDGTIRRSSVRSDLKGSED 60
Query: 61 FHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILKETQRNIFGIRSDDLKSVNL 120
FHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILKETQRNIFGIRSDDLKSVNL
Sbjct: 61 FHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILKETQRNIFGIRSDDLKSVNL 120
Query: 121 QEGSDVDLDLATSLMELYRNHNGSRDIITSEVSDHSSSLIDKEHNTDASTHPKQISCSIE 180
QEGSDVDLDLATSLMELYRNHNGSRDIITSEVSDHSSSLIDKEHNTDASTHPKQISCSIE
Sbjct: 121 QEGSDVDLDLATSLMELYRNHNGSRDIITSEVSDHSSSLIDKEHNTDASTHPKQISCSIE 180
Query: 181 KALEAVAEAVITHQSANGKYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQC 240
KALEAVAEAVITHQSANGKYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQC
Sbjct: 181 KALEAVAEAVITHQSANGKYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQC 240
Query: 241 LQNLYTALGNPMLELAEDDKQTKSKVTINSLEQSEVSKYSVQKTHNFFLKEDKLVMRRPP 300
LQNLYTALGNPMLELAEDDKQTKSKVTINSLEQSEVSKYSVQKTHNFFLKEDKLVMRRPP
Sbjct: 241 LQNLYTALGNPMLELAEDDKQTKSKVTINSLEQSEVSKYSVQKTHNFFLKEDKLVMRRPP 300
Query: 301 KLNDSPRGVSRIVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLREL 360
KLNDSPRGVSRIVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLREL
Sbjct: 301 KLNDSPRGVSRIVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLREL 360
Query: 361 KRRLRLAISNNRKDVMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPED 420
KRRLRLAISNNRKDVMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPED
Sbjct: 361 KRRLRLAISNNRKDVMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPED 420
Query: 421 SGSGMGNDATHCASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEPFGKLLSYSENDTFSQ 480
SGSGMGNDATHCASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEPFGKLLSYSENDTFSQ
Sbjct: 421 SGSGMGNDATHCASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEPFGKLLSYSENDTFSQ 480
Query: 481 TDCPQEDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSANTQLDEFKTD 540
TDCPQEDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSANTQLDEFKTD
Sbjct: 481 TDCPQEDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSANTQLDEFKTD 540
Query: 541 HASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLEQINTDQCFAEESQTMN 600
HASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLEQINTDQCFAEESQTMN
Sbjct: 541 HASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLEQINTDQCFAEESQTMN 600
Query: 601 ALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDSFLG 660
ALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDSFLG
Sbjct: 601 ALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDSFLG 660
Query: 661 DGISPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQNTPQEAILDDKQARLSFIKVVLE 720
DGISPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQNTPQEAILDDKQARLSFIKVVLE
Sbjct: 661 DGISPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQNTPQEAILDDKQARLSFIKVVLE 720
Query: 721 ASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDAVFLFDCVEEALCKIRDNFFGCD 780
ASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDAVFLFDCVEEALCKIRDNFFGCD
Sbjct: 721 ASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDAVFLFDCVEEALCKIRDNFFGCD 780
Query: 781 PWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPSTLDRVVLKDLESGSWMDLRVDTE 840
PWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPSTLDRVVLKDLESGSWMDLRVDTE
Sbjct: 781 PWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPSTLDRVVLKDLESGSWMDLRVDTE 840
Query: 841 EVAIEVWDTLLDDLLEEMVFDLWL 864
EVAIEVWDTLLDDLLEEMVFDLWL
Sbjct: 841 EVAIEVWDTLLDDLLEEMVFDLWL 864
>Os10g0550000 Conserved hypothetical protein
Length = 901
Score = 268 bits (685), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 269/946 (28%), Positives = 436/946 (46%), Gaps = 132/946 (13%)
Query: 6 MAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISDG--TIRRSSVRS------DLKG 57
M ++S+K+ + E+ ++GC+ GL+ M FRR K + D RR + R +K
Sbjct: 1 MGRRSHKRSTEQEENNVGCVWGLMRMLYFRRDAKFLLDTKQVSRRHTFRELADGRHSVKN 60
Query: 58 SEDFHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILK----ETQR-------- 105
S DF D++K+ + + ++K LME+E+ + K E QR
Sbjct: 61 SSDFVETDDDDDNKE----ECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDLGYD 116
Query: 106 ---------------------NIFG------IRSDDLKSVNLQEGSDVDLDLATSLMELY 138
+IF + S KS+N E D++ LA L E+Y
Sbjct: 117 VSLDGGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLGEIY 176
Query: 139 RNHNGSRDIITSEVSDHSSSLIDKEHNTDASTHPKQISCSIEKALEAVAEAVITHQSANG 198
R H + SL HN + + E++ E+ E ++ S
Sbjct: 177 RCHGECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENS--- 233
Query: 199 KYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRMLQCLQNLYTALGNPMLELAED 258
S+S A+ EF DA+++LS+N E FL LL+ P+S +L ++ + LE D
Sbjct: 234 --RSNSRAAQFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLE--PD 289
Query: 259 DKQTKSKVTINSLEQSEVSKYSV-------QKTHNFFLKEDKLVMRRPPKLNDSPRGVSR 311
+S + LE+ S + + + H FF ++D+ ++ P+ + P+ VS+
Sbjct: 290 KSLGRSSI----LEEKRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSK 345
Query: 312 IVILKPSPGRS--QTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLRELKRRLRLAIS 369
IVILKP+ GR +T SS + Q Q E S + + FS++E++RR ++
Sbjct: 346 IVILKPNQGRRIDETETTSSRYLH---QQPCTSQAPEFSGRESSKFSIKEVRRRFKIVTG 402
Query: 370 NNR--KDVMSSTFQKDDSTQ-----------QFILESMSTSMDSSECEKAEKPSIVDKKT 416
+++ K+ + + DS Q + + E +S + KPS K+
Sbjct: 403 DSKREKNAIPAENLPGDSHQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKPSASSKQK 462
Query: 417 IPEDSGSGMGNDATHCASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEPFGKLLSYSEND 476
DS S + + T +S FYEKAKKHL + L N TSQ S P ++ S S
Sbjct: 463 QQNDSQSEISDHTT--GASIFYEKAKKHLADMLKN----TSQSA--SYPTAQV-SKSLEG 513
Query: 477 TFSQTDCPQEDVK--LSEDSTASSALLTTEQEDI----SSNSDPPMKFGELIPLDTSTSA 530
SQ P +V S+ + E+ ++ + + + P + E L ++ +
Sbjct: 514 MLSQ---PHYNVSPPRSDHRGKCHNAFSPEEPEVCLVKAVDVEEPAQ--ERSQLHDNSES 568
Query: 531 NTQLDEFKTDHASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLEQINTDQ 590
N D ++E I +E T EGI D DT V ++ + + I Q
Sbjct: 569 NAYSTSVAVDDQVAVLEECGI-KEDTQEGIIYATDEVDT--VPVEGVGKLDCSKTICNIQ 625
Query: 591 CFAEESQTMNALPEVSLHTPEKVNEQ-FNHSPSAVV--------GLTKPS---ILTFSCS 638
C E T + LPE+ T K Q F SP ++V +P L C
Sbjct: 626 CIPAEQYTDSPLPEILEGTEGKEPVQMFMSSPESMVENLEQQDPKTPEPKSSPKLPDGC- 684
Query: 639 PENADDKEERLSPQSVLDSFLGDGISPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQN 698
PE +++K+E+ SP SVLDSF D SP KT + EL S L+ D+ SG
Sbjct: 685 PEQSNEKKEQPSPVSVLDSFDEDDSSPECKTMKKYELHEVSCGTLYFPDNE-SGV----- 738
Query: 699 TPQEAILDDKQARLSFIKVVLEASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDA 758
+ +DK ARL +I +VLE S+ +E++ E+WY++ L+ + E+ DD
Sbjct: 739 ---KVFWEDKNARLDYIMLVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRIDDM 795
Query: 759 VFLFDCVEEALCKIRDNFFGCDPWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPST 818
LFDC+ EAL +I++ +F W++++KH +R PVG LI EVD +D + PST
Sbjct: 796 KILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEVDKYVDGYLKCSFPST 855
Query: 819 LDRVVLKDLESGSWMDLRVDTEEVAIEVWDTLLDDLLEEMVFDLWL 864
L++++ +DLE +WMD+R TE + +E+W+ +LD+L++E VFDLW+
Sbjct: 856 LEQIIKRDLEVQAWMDIRSKTEGIVVEIWEFVLDELIDEAVFDLWI 901
>Os03g0106200 Conserved hypothetical protein
Length = 879
Score = 236 bits (601), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 250/942 (26%), Positives = 425/942 (45%), Gaps = 146/942 (15%)
Query: 6 MAKKSYKQRCKSEKVHMGCMSGLIHMFDFRRSPKLISD---GTIRR-----SSVRSDLKG 57
M K+S QR + ++GCM GLI M FRR K + D G+ R S R K
Sbjct: 1 MGKRS--QRLARRQENIGCMWGLIGMLYFRRDAKFLLDRKQGSRRHTFGGLSGRRHSRKK 58
Query: 58 SEDFHGIIFSDEDKDYGVKTIH---ASRPSIKALMEEEMASGTQILK----ETQRNIFGI 110
S DF +E +YG I + ++K LME+E+ Q+ K E QR + +
Sbjct: 59 SRDF------EETDEYGEDNIEECDTRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADL 112
Query: 111 RSD-----------------------------------DLKSVNLQEGSDVDLDLATSLM 135
D KS+ E D++L LA +
Sbjct: 113 GHDVCLEKSSMQSTKQNRAKSHSTSTAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVG 172
Query: 136 ELYRNHNGSRDI--ITSEVSDHSSSLIDKEHNTDASTHPKQISCSIEKALEAVAEAVITH 193
ELY H+ ++ + E+ H + + + K + C ++A E +
Sbjct: 173 ELYGYHDDCKNKSELCPELKSHIHTKL---------SELKSVPC--QRAYEESPDWG-QR 220
Query: 194 QSANGKYTSSSYEARPNEFLDALQLLSANEEFFLMLLKDPSSRML-----QCLQN--LYT 246
+ KY +S + N+ +DA +LS +E FL L+ PS L Q QN + T
Sbjct: 221 EHFYEKYICNSRSYQSNKLVDAPDMLSPEKELFLKTLQKPSPHTLEKENTQNNQNRQVVT 280
Query: 247 AL-GNPMLELAEDDKQTKSKVTINSLEQSEVSKYSVQKTHNFFLKEDKLVMRRPPKLNDS 305
L +LE E+ K +K + + +S + + FF ++DK +M+ + +S
Sbjct: 281 KLEPRKILEKGENTKNSKQ-------HEVAIKTHSKEGRNIFFWRKDKSIMKGTSEGTNS 333
Query: 306 PRGVSRIVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLRELKRRLR 365
+ V++IVILKP+P T++ ++S Q +Q + + FS++E++RR +
Sbjct: 334 SKMVNKIVILKPNPRGIDTTVATASTCLD--QQSCTIQSPKYPATESSKFSIKEVRRRFK 391
Query: 366 LAISNNRKD---VMSSTFQKDDSTQQFILESMSTSMDSSECEKAEKPSIVDKKTIPEDSG 422
+ + R+ V Q+D +Q+ DS + +K + K + G
Sbjct: 392 IVTGDTRRGRPSVYEDDLQRD--SQRINDSVFKVRKDSKQSDKDNLRPLTSGKQKQRNDG 449
Query: 423 SG--MGNDATHCASSFFYEKAKKHLIERLDNQKNDTSQ-IVHKSEPFGKLLSYSENDTFS 479
G G+ T +S FYE+AKKHL + L+ + T VH S+ +LS + + S
Sbjct: 450 LGEINGDIITSKDTSIFYEEAKKHLTDILEYNSHTTKHPTVHTSKSLIGMLSLPQRNASS 509
Query: 480 QTDCP--QEDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSA--NTQLD 535
P + + LS + SA+ E+ + + D L D+ + A N+++
Sbjct: 510 PRSSPRLKGRIDLSPEEINISAIQQDERTEYAKERD-------LSDEDSGSVACGNSEVL 562
Query: 536 EFKTDHASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIE----------TSTESLEQ 585
+ K D H +K QE +G + D P S I T T SLE
Sbjct: 563 DGKADQDRHSMK-----QETAQDGDIMHIEEIDKPACSETICSEGITLKEQCTCTSSLEL 617
Query: 586 INTDQCFAEESQTMNALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDK 645
I + E + + + PE + E + Q +P + L L SPE +K
Sbjct: 618 IEGAEPGREHAGMLLSYPE---NVVESLEHQEPKTPRSSASLE----LISQISPEGNHEK 670
Query: 646 EERLSPQSVLDSFLGDGI-SPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQN--TPQE 702
+E+ SP SVLD F + + SP H+T + E+ R P + + + Q
Sbjct: 671 QEQPSPVSVLDPFFCEDVDSPDHETMIKCEMHQDMMR------------PHIPDAISDQW 718
Query: 703 AILDDKQARLSFIKVVLEASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYCLTDDAVFLF 762
+D+ ARLS+IK +LE S+ + ++ E+WY++ L+ ++ E+ TDD F
Sbjct: 719 VFWEDEDARLSYIKAMLELSELCTYQNLEVWYLEDELISPCMIEELHQGN-QTDDLKLPF 777
Query: 763 DCVEEALCKIRDNFFGCDPWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEVPSTLDRV 822
DC+ EA+ I++ +F P +++L H ++P P+G LIQE++ I+ + ++ P TL+++
Sbjct: 778 DCICEAITIIQETYFRNPPCLSFLMHKIQPPPMGENLIQEINKHIERHLHNQFPRTLNQL 837
Query: 823 VLKDLESGSWMDLRVDTEEVAIEVWDTLLDDLLEEMVFDLWL 864
V DLE G+WM+L++++EE+ ++ W+ +LD+LLEE+ DL +
Sbjct: 838 VNIDLEDGTWMNLQLESEEIIVDTWEFILDELLEEVANDLLI 879
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,193,854
Number of extensions: 1201307
Number of successful extensions: 2688
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2677
Number of HSP's successfully gapped: 3
Length of query: 864
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 755
Effective length of database: 11,344,475
Effective search space: 8565078625
Effective search space used: 8565078625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)