Os10g0550000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0550000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.85 | 0.215 | 9.36 | 0.48 | 0.53 | -0.187 | -0.268 | 1.08 | 0.258 | 4.98 | 6.526 | 1408 | -- | -- |
| 22.65 | 0.222 | 9.35 | 0.625 | 0.525 | -0.135 | -0.26 | -- | 0.297 | 5.09 | 14.74 | 1357 | -- | -- |
| 21.02 | 0.214 | 9.36 | 0.479 | 0.529 | -0.189 | -- | 1.1 | 0.257 | 4.99 | 5.918 | 1402 | -- | -- |
| 22.86 | 0.223 | 9.35 | 0.624 | 0.525 | -0.138 | -- | -- | 0.298 | 5.21 | 16.07 | 1311 | -- | -- |
| 35.61 | 0.278 | 9.37 | 0.481 | -- | -0.238 | -- | 1.03 | 0.257 | -- | 5.551 | 1392 | -- | -- |
| 23.17 | 0.226 | 9.34 | 0.639 | 0.53 | -- | -0.278 | -- | 0.327 | 4.94 | -- | -- | -- | -- |
| 23.37 | 0.226 | 9.34 | 0.639 | 0.529 | -- | -- | -- | 0.328 | 4.94 | -- | -- | -- | -- |
| 24.61 | 0.231 | 9.34 | 0.695 | -- | 0.551 | -- | -- | 0.361 | -- | 0.17 | 617 | -- | -- |
| 32.93 | 0.267 | 9.37 | -- | 0.538 | -0.203 | -- | -- | 0.214 | 5.29 | 24.33 | 1306 | -- | -- |
| 38.09 | 0.288 | 9.35 | 0.659 | -- | -- | -- | -- | 0.342 | -- | -- | -- | -- | -- |
| 34.14 | 0.273 | 9.36 | -- | 0.54 | -- | -- | -- | 0.257 | 4.9 | -- | -- | -- | -- |
| 36.75 | 0.282 | 9.36 | -- | -- | 0.529 | -- | -- | 0.281 | -- | 2.76 | 591 | -- | -- |
| 49.53 | 0.328 | 9.36 | -- | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.55 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 2 | 19.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 15 |
| 11 | 19.70 | humidity | 80.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 32 | 19.84 | humidity | 80.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 50 | 19.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 64 | 20.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 107 | 20.30 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 162 | 20.49 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 227 | 20.62 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 229 | 20.63 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 329 | 20.77 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 330 | 20.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 366 | 20.82 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 367 | 20.82 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 417 | 20.85 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 443 | 20.87 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 481 | 20.89 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 588 | 20.95 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 605 | 20.97 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 627 | 20.98 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 629 | 20.98 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 673 | 21.00 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 747 | 21.03 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 760 | 21.04 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 786 | 21.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 801 | 21.05 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 843 | 21.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 933 | 21.10 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 953 | 21.11 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 2 | 2 |
| 954 | 21.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 3 |