BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0550000 Os10g0550000|AK065729
(901 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00440.2 | chr4:195176-198225 FORWARD LENGTH=836 98 2e-20
AT2G45900.1 | chr2:18886069-18888674 REVERSE LENGTH=721 89 1e-17
AT3G61380.1 | chr3:22708769-22711279 REVERSE LENGTH=719 67 5e-11
AT1G07620.1 | chr1:2344556-2346374 REVERSE LENGTH=553 63 8e-10
AT5G02390.1 | chr5:508764-511710 REVERSE LENGTH=836 54 4e-07
AT4G28760.1 | chr4:14208640-14211811 FORWARD LENGTH=925 52 1e-06
>AT4G00440.2 | chr4:195176-198225 FORWARD LENGTH=836
Length = 835
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 225/916 (24%), Positives = 350/916 (38%), Gaps = 158/916 (17%)
Query: 1 MGRRSHKRST-EQEENNVGCVWGLMRMLYFRRDA---KFLLDTKQVSRRHTFRELADGRH 56
M +++ +R+ QE +GC+WG M M FR K LLD K S EL +
Sbjct: 1 MAKKTQRRAAARQEREQLGCMWGFMNMFSFRHGPLAHKLLLDQKHASGNPKNNELNKSKF 60
Query: 57 SVKNSSDFVETXXXXXNKEECASQKRTVKKLMEDELGKVNLLKKIPSNEIQRGLPDL--- 113
K D ET K +VKKL+ +EL +KK N L D
Sbjct: 61 REK---DAQETHVGEERNITITIIKPSVKKLIAEELSIDKEIKKQRENAEAGQLSDSELE 117
Query: 114 GYDVSLDGGSEHTNKPVAALNQHTDIFASYLSGSVYSQGSKSLNHSEEYDLESVLANFLG 173
G T K H ++ S V + +S + D+++++ F
Sbjct: 118 GRRRKNQRRKNKTRKKSCDNFSHMNLVDSE-EPLVQRRNRRS---ARSVDIDNMIEEFYS 173
Query: 174 EIYRCHGECPHGDCKNKGELCPSLKSLIHNKLNDLNNPHATHGNEQSPESKGEGLLGENS 233
EI+R D K +L +K LI KL HGN
Sbjct: 174 EIHRRSTSHAKNDEDYKEKLRELVKFLISQKL--------LHGN--------------RP 211
Query: 234 RSNSRAAQFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLEPDKSLG 293
R NS K+ + +IL S+ ELFLKLLQ P IL + +K
Sbjct: 212 RGNSEILTSKDLMEVFQILGSDEELFLKLLQDP--EIL--------------VPREKGAE 255
Query: 294 RSSILEEKRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANRPQPVSKIVILKPNQ 353
S++E ++ S LA K FF RKD + +++ E ++R I ILKP
Sbjct: 256 SLSLVESEQSS---LADKKWSS-----FFRRKD--EPQEECEASDR------IFILKPRS 299
Query: 354 GRRIDETETTSSRYLHQQPCTSQAPEFSG------RESSKFSIKEVRRRFKIVTGDSKRE 407
+ SS + +S G R SS + + E++R+ K
Sbjct: 300 A-------SFSSPDIGNSRGSSPDSHLMGNKLQNERNSSHYFLSEIKRKLK--------- 343
Query: 408 KNAIPAENLPGDSHQLKDSVVEDKDPRHLTEGSLPDKAASNFKNGIKPXXXXXXXXXXXX 467
+AI E G EG K + KP
Sbjct: 344 -HAIKKEQPAGG----------------FGEGFPKTKDHFFLERMAKPSTSQKKSHSE-- 384
Query: 468 XXEISDHTTGASIFYEKAKKHLADMLKNTSQSASYPTAQVSKSLEGMLSQPHYNVSPPRS 527
D S Y +AKKHL++ML N + + QV +SL +LS P Y +SP S
Sbjct: 385 ----DDKKQRVSNIYTEAKKHLSEMLNNGDLDSKSTSRQVQRSLGRILSFPEY-LSPLNS 439
Query: 528 -DHRGKCHNAFSPEEPEVCLVKAVDVEEPAQERSQLHDNSESNAYSTSVAVDDQVAVLEE 586
R + + + + V++++ SQ +N++ + S DD + +
Sbjct: 440 PGRRWEKSSTAHKKSASADFINLVNIKKETHA-SQPEENTDIQVCNLSKEPDDSIQPI-- 496
Query: 587 CGIKEDTQEGIIYATDEVDTVPVEGVGKLDCSKTICNIQCIPAEQYTDSPLPEILEGTEG 646
E ++ + + + + G D + +P E S L L E
Sbjct: 497 --ASEPNEKSVDIEDETANEDNMFSAGSADDVMIPNELDEVPEE--ASSTLIGDLSKVEA 552
Query: 647 KEPVQMFMSSPESMVENLEQQDPKTPEPKSSPKLPDGCPEQSNEKK-------EQPSPVS 699
++ + ++S ++ +E E Q P + SS P C Q+ E K E SP+S
Sbjct: 553 QDEQRDSINSKQTSLE--ESQPPLS----SSVASPSHCLAQTEECKSAITDFPEWSSPIS 606
Query: 700 VLDS-FDEDDSSPECKTMKKYELHEVSCGTLYFPDNESGVKVFWE-----DKNARLDYIM 753
VL+ F EDD SP K + EV ++F D + + E DK Y+
Sbjct: 607 VLEPLFVEDDISP-AKMRSQSGEAEVQPWCIHF-DEKDPAPTYRENSVTSDKELVFKYVK 664
Query: 754 LVLELSELCAEQNLEVWYLE----DELISPCMFEELQNQGDRI-DDMKILFDCICEALTE 808
VL+ + ++E YL+ D+L+ P + + +++ D ++LFDCI EAL E
Sbjct: 665 AVLD----AVDSDIEELYLKAQFSDQLLEPALISNIPFCPNQLCPDHELLFDCINEALME 720
Query: 809 IQERYFRLSSWLSFVKHDIRTPPVGEKLISEVDKYVDGYLKCSFPS-TLEQIIKRDL-EV 866
+ W SFV R + +I EV + V +L L+QI+++D+
Sbjct: 721 L----CCCPPWASFVTPRTRVFSTVKSIIHEVQEAVYWHLLPLPLPHALDQIVRKDMARA 776
Query: 867 QAWMDIRSKTEGIVVE 882
W+DIR + I E
Sbjct: 777 GNWLDIRCDIDCIGFE 792
>AT2G45900.1 | chr2:18886069-18888674 REVERSE LENGTH=721
Length = 720
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 16/242 (6%)
Query: 665 EQQDPKTPEPKSSPKLPDGCPEQSNEKKEQPSPVSVLDSF-DEDDSSPECKTMKKYELHE 723
E Q P +P P SS ++ + C E + + + SPVSVL+ F +DD+SP E+
Sbjct: 468 EGQSPCSP-PNSSVRMSE-CQENTTDVLGKSSPVSVLEPFFTDDDTSPNSSRFSSAEMRM 525
Query: 724 VSCGTLY------FPDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWYLEDELI 777
+ P+ ++ VK +DK L+YI V++ SEL E+ L + ++++
Sbjct: 526 QPLCIRFDEPDFPGPEKDNDVKTRMDDKELALEYIQAVVKSSELNWEELLARSFYSEKIL 585
Query: 778 SPCMFEELQNQGDRI-DDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKL 836
+ +++ + D K+LFDCI E L E + W+SFVK + P E
Sbjct: 586 EQALMDDIDFCSTNLCSDKKLLFDCINEVLME----FCGHGPWISFVKPAMHFFPDMENA 641
Query: 837 ISEVDKYVDGY-LKCSFPSTLEQIIKRDL-EVQAWMDIRSKTEGIVVEIWEFVLDELIDE 894
+ V + V + L P TL+QI+++DL WMD+R IV E E +LDEL++E
Sbjct: 642 VEVVQEEVYWHLLPLPSPHTLDQIVRKDLARTGNWMDLRFDIGCIVSETGEIILDELLEE 701
Query: 895 AV 896
+
Sbjct: 702 II 703
>AT3G61380.1 | chr3:22708769-22711279 REVERSE LENGTH=719
Length = 718
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 732 PDNESGVKVFWEDKNARLDYIMLVLELSELCAEQNLEVWY-----LEDELISPCMFEELQ 786
P+ ++ V+ +DK L YI V++ + L E+ L + LE EL +F Q
Sbjct: 531 PEKDNNVEATIDDKELTLAYIEAVVKSAALSWEELLTRPFYSEQLLELELTDGIVFSSTQ 590
Query: 787 NQGDRIDDMKILFDCICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEVDKYVDG 846
DD +L+DCI E L + F W+SFVK +++ E + V
Sbjct: 591 ----LCDDKNLLYDCINEVLMDFCWNEFNPGPWISFVKPEVQLISDMEIAAKVAQEGVYW 646
Query: 847 YLK-CSFPSTLEQIIKRDL-EVQAWMDIRSKTEGIVVEIWEFVLDELIDEAVF 897
+L+ FP TL+QI+K+D+ +WMD+R + + E +LDEL++E +
Sbjct: 647 HLQPLPFPHTLDQIVKKDMARTGSWMDLRFEIGCLGSYTSEMILDELVEEIIM 699
>AT1G07620.1 | chr1:2344556-2346374 REVERSE LENGTH=553
Length = 552
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 17/162 (10%)
Query: 743 EDKNARLDYIMLVLELSELCAEQ-NLEVWYLEDELISPCMFEELQNQGDR-IDDMKILFD 800
ED++A Y+ VL++S + N E WY E++ ++P + EL Q + ++D ++LFD
Sbjct: 397 EDEDAYFCYVKKVLKVSGFLENKDNEEKWYSEEQPLNPSLLYELDIQEEETVNDKELLFD 456
Query: 801 CICEALTEIQERYFRLSSWLSFVKHDIRTPPVGEKLISEVDKYVDGYLKC----SFPSTL 856
+ EA+ E Q S + F K T P G++ + EV V+ L + +L
Sbjct: 457 LVNEAIVETQNH-----SQIYFPK----TFPYGKRYLDEVWGRVEWSLSGLGAENRDRSL 507
Query: 857 EQIIKRDLEVQA--WMDIRSKTEGIVVEIWEFVLDELIDEAV 896
+ I+ RDL ++ WM+++ ++E + +E+ + + D+++DE +
Sbjct: 508 DDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIFDDVLDELL 549
>AT5G02390.1 | chr5:508764-511710 REVERSE LENGTH=836
Length = 835
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 747 ARLDYIMLVLELSELCAEQNLEVWYLEDELISPCMFEEL-----------------QNQG 789
+ +Y+ +LE+S A ++L +W L+ + + P ++EE+ + +G
Sbjct: 663 VKFNYVRDILEISGFNAPESLSMWQLDYQPLDPLVYEEVTTTTTGCMFQDPECSRNEEEG 722
Query: 790 DRIDDMKILFDCICEALTEIQERYFR-----LSSWLSFVKHDIRTPPVGEKLISEVDKYV 844
+ + +LFD I E L EI ER + LSS I PVG ++ EV +
Sbjct: 723 GNCNHL-LLFDLINEVLIEIYERSYHYYPKPLSSLCK-----IHPMPVGYSVLKEVWVRI 776
Query: 845 DGYLKCS---FPSTLEQIIKRDLEV-QAWMDIRSKTEGIVVEIWEFVL 888
YL+ + ++++ RDL WMD++ ++E + +E+ + +
Sbjct: 777 SCYLRYKPYDEQQSFDKVMSRDLSRDDGWMDLQFESECVGIEVEDLIF 824
>AT4G28760.1 | chr4:14208640-14211811 FORWARD LENGTH=925
Length = 924
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 31/174 (17%)
Query: 241 QFKEFKDAVEILSSNNELFLKLLQKPNSHILDNIRKYQNSRLTTKLEPDKSLGRSSILEE 300
Q KEF+DA+E+LSSN +LF++ LQ+ NS N+ + + + P R ++L
Sbjct: 221 QSKEFQDALEVLSSNKDLFVQFLQESNSFSQQNLSDFHH------VPPHSEAKRITVLRP 274
Query: 301 KRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANR----PQPV------------S 344
+ E QG+ K V K + Q+ NR P P +
Sbjct: 275 SKAGETEKYV-VQGRRNKQV----KKLASSSQETGWGNRDLGYPSPYVNRGTEEHTVQPT 329
Query: 345 KIVILKPNQGRRIDETETTSS----RYLHQQPCTSQAPEFSGRESSKFSIKEVR 394
+IV+LKP+ G+ +D +SS R LH + + + +E +K ++VR
Sbjct: 330 RIVVLKPSLGKSLDIKAVSSSQSSPRGLHSRGYFDEPEDVETKEVAKEITRQVR 383
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,661,200
Number of extensions: 943857
Number of successful extensions: 2478
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2464
Number of HSP's successfully gapped: 11
Length of query: 901
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 793
Effective length of database: 8,145,641
Effective search space: 6459493313
Effective search space used: 6459493313
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)