BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0559200 Os04g0559200|AK066088
(864 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00440.2 | chr4:195176-198225 FORWARD LENGTH=836 119 6e-27
AT2G45900.1 | chr2:18886069-18888674 REVERSE LENGTH=721 100 5e-21
AT3G61380.1 | chr3:22708769-22711279 REVERSE LENGTH=719 97 3e-20
AT5G02390.1 | chr5:508764-511710 REVERSE LENGTH=836 57 3e-08
>AT4G00440.2 | chr4:195176-198225 FORWARD LENGTH=836
Length = 835
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 220/901 (24%), Positives = 377/901 (41%), Gaps = 168/901 (18%)
Query: 6 MAKKSYKQRC-KSEKVHMGCMSGLIHMFDFRRSP---KLISD----------GTIRRSSV 51
MAKK+ ++ + E+ +GCM G ++MF FR P KL+ D + +S
Sbjct: 1 MAKKTQRRAAARQEREQLGCMWGFMNMFSFRHGPLAHKLLLDQKHASGNPKNNELNKSKF 60
Query: 52 RSDLKGSEDFHGIIFSDEDKDYGVKTIHASRPSIKALMEEEMASGTQILKETQRNIFGIR 111
R K +++ H E+++ + I +PS+K L+ EE++ +I K+ + G
Sbjct: 61 RE--KDAQETH----VGEERNITITII---KPSVKKLIAEELSIDKEIKKQRENAEAGQL 111
Query: 112 SDD---------------LKSVNLQEGSDVDLDLATSLMELYRNHNGSRDIITSEVSDHS 156
SD + + S ++L + + RN +R + + +
Sbjct: 112 SDSELEGRRRKNQRRKNKTRKKSCDNFSHMNLVDSEEPLVQRRNRRSARSVDIDNMIEEF 171
Query: 157 SSLIDKEHNTDASTHPKQISCSIEKALEAVAEAVITHQSANGKYTSSSYEA-RPNEFLDA 215
S I + +++H K EK E V + +I+ + +G + E + ++
Sbjct: 172 YSEIHRR----STSHAKNDEDYKEKLRELV-KFLISQKLLHGNRPRGNSEILTSKDLMEV 226
Query: 216 LQLLSANEEFFLMLLKDPSSRMLQCLQNLYTALGNPMLELAEDDKQTKSKVTINSLEQSE 275
Q+L ++EE FL LL+DP L +K +S SL +SE
Sbjct: 227 FQILGSDEELFLKLLQDPEI-------------------LVPREKGAESL----SLVESE 263
Query: 276 VSKYSVQKTHNFFLKEDKLVMRRPPKLNDSPRGVSRIVILKPSPGRSQTSLISSSAMSSP 335
S + +K +FF RR + + RI ILKP + I +S SSP
Sbjct: 264 QSSLADKKWSSFF--------RRKDEPQEECEASDRIFILKPRSASFSSPDIGNSRGSSP 315
Query: 336 VQTRADLQGQE-QSDKYARHFSLRELKRRLRLAISNNRKDVMSSTFQKD--DSTQQFILE 392
+ L G + Q+++ + H+ L E+KR+L+ AI +K+ + F + + F LE
Sbjct: 316 ---DSHLMGNKLQNERNSSHYFLSEIKRKLKHAI---KKEQPAGGFGEGFPKTKDHFFLE 369
Query: 393 SMSTSMDSSECEKAEKPSIVDKKTIPEDSGSGMGNDATHCASSFFYEKAKKHLIERLDNQ 452
M+ KPS KK+ ED D S+ + E AKKHL E L+N
Sbjct: 370 RMA------------KPSTSQKKSHSED-------DKKQRVSNIYTE-AKKHLSEMLNNG 409
Query: 453 KND---TSQIVHKSEPFGKLLSYSENDTFSQTDCPQEDVKLSEDSTASSA------LLTT 503
D TS+ V +S G++LS+ E S + P + S + SA L+
Sbjct: 410 DLDSKSTSRQVQRS--LGRILSFPE--YLSPLNSPGRRWEKSSTAHKKSASADFINLVNI 465
Query: 504 EQEDISS----NSDPPMKFGELIPLDTSTSANTQLDEFKTDHASHPVKEGTISQELTSEG 559
++E +S N+D + P D+ ++ +E D E + +++
Sbjct: 466 KKETHASQPEENTDIQVCNLSKEPDDSIQPIASEPNEKSVDIEDETANEDNMFSAGSADD 525
Query: 560 IDSMNDATDTPQVSI--------QIETSTESLEQINTDQCFAEESQTMNALPEVSLHTPE 611
+ N+ + P+ + ++E E + IN+ Q EESQ P +S
Sbjct: 526 VMIPNELDEVPEEASSTLIGDLSKVEAQDEQRDSINSKQTSLEESQ-----PPLSSSVA- 579
Query: 612 KVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVLDS-FLGDGISPSHKTR 670
SPS + T+ + PE + SP SVL+ F+ D ISP+
Sbjct: 580 --------SPSHCLAQTEECKSAITDFPEWS-------SPISVLEPLFVEDDISPAKMRS 624
Query: 671 TQDELSMPSTRILFKEDDTPSGTPTLQNTPQEAILDDKQARLSFIKVVLEASDFLSEESS 730
E + I F E D PT + + ++ DK+ ++K VL+A D EE
Sbjct: 625 QSGEAEVQPWCIHFDEKDP---APTYR---ENSVTSDKELVFKYVKAVLDAVDSDIEELY 678
Query: 731 EIWYVDGSLLDTSVLAEVGTLYC---LTDDAVFLFDCVEEALCKIRDNFFGCDPWVAYLK 787
LL+ ++++ + +C L D LFDC+ EAL ++ C PW +++
Sbjct: 679 LKAQFSDQLLEPALISNIP--FCPNQLCPDHELLFDCINEALMEL----CCCPPWASFVT 732
Query: 788 HSVRPAPVGTGLIQEVDNCID-SLVSDEVPSTLDRVVLKDL-ESGSWMDLRVDTEEVAIE 845
R +I EV + L+ +P LD++V KD+ +G+W+D+R D + + E
Sbjct: 733 PRTRVFSTVKSIIHEVQEAVYWHLLPLPLPHALDQIVRKDMARAGNWLDIRCDIDCIGFE 792
Query: 846 V 846
Sbjct: 793 T 793
>AT2G45900.1 | chr2:18886069-18888674 REVERSE LENGTH=721
Length = 720
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 144/578 (24%), Positives = 246/578 (42%), Gaps = 113/578 (19%)
Query: 312 IVILKPSPGRSQTSLISSSAMSSPVQTRADLQGQEQSDKYARHFSLRELKRRLRLAISNN 371
IVILKP P T + SS + +A +++K++ FSL ++RRL+ A+ N
Sbjct: 209 IVILKPEPN---TLDVGSSPGTPSTDNKA------KNEKFSSRFSLSRIRRRLKFAVGKN 259
Query: 372 RKDVMSSTFQKDDSTQQFILESMSTSMDSSEC--EKAEKPSIVDKKTIPEDSGSGMGN-- 427
+ + D+ ++S+SM + C E+ E D + +P+ + G N
Sbjct: 260 PCNAQHDSDPDPDAD------ALSSSMSQNCCLGEEIETNPGSDGEILPDIASKGEANKE 313
Query: 428 DATH----------CASSFFYEKAKKHLIERLDNQKNDTSQIVHKSEP--FGKLLSYSEN 475
D H C Y AKKHL E L D + + K P GK+L+ E
Sbjct: 314 DTFHESEKDSKKSMCG---IYIAAKKHLSEMLAEGDID-ADLPDKEVPRILGKILALPE- 368
Query: 476 DTFSQTDCPQEDVKLSEDSTASSALLTTEQEDISSNSDPPMKFGELIPLDTSTSANTQLD 535
F+ + P+ + L + +D + E + LD++ T+
Sbjct: 369 -FFTPENSPRVTLALDHQIIEKPNIQQCSSKDY---------YYEPLRLDSNNHEETEF- 417
Query: 536 EFKTDHASHPVKEGTISQELTSEGIDSMNDATDTPQVSIQIETSTESLEQINTDQCFAEE 595
PV E T +E +DS+++A + + + +Q+ + +E
Sbjct: 418 --------MPVPEDTRMEEEEQTVMDSLSEAISSSIIQQDAYIDEDEHKQLLEKEVL-KE 468
Query: 596 SQTMNALPEVSLHTPEKVNEQFNHSPSAVVGLTKPSILTFSCSPENADDKEERLSPQSVL 655
Q+ + P S+ E C EN D + SP SVL
Sbjct: 469 GQSPCSPPNSSVRMSE-------------------------CQ-ENTTDVLGKSSPVSVL 502
Query: 656 DSFL-GDGISPSHKTRTQDELSMPSTRILFKEDDTPSGTPTLQNTPQEAILDDKQARLSF 714
+ F D SP+ + E+ M I F E D P P N + +DDK+ L +
Sbjct: 503 EPFFTDDDTSPNSSRFSSAEMRMQPLCIRFDEPDFPG--PEKDNDVK-TRMDDKELALEY 559
Query: 715 IKVVLEASDFLSEESSEIWYVDGSLLDTSVLAEVGTLYC---LTDDAVFLFDCVEEALCK 771
I+ V+++S+ EE + +L+ +++ ++ +C L D LFDC+ E L +
Sbjct: 560 IQAVVKSSELNWEELLARSFYSEKILEQALMDDID--FCSTNLCSDKKLLFDCINEVLME 617
Query: 772 IRDNFFGCDPWVAYLKHSVRPAPVGTGLIQEVDNCIDSLVSDEV---------PSTLDRV 822
F G PW++++K ++ P +++N ++ +V +EV P TLD++
Sbjct: 618 ----FCGHGPWISFVKPAMHFFP-------DMENAVE-VVQEEVYWHLLPLPSPHTLDQI 665
Query: 823 VLKDL-ESGSWMDLRVDTEEVAIEVWDTLLDDLLEEMV 859
V KDL +G+WMDLR D + E + +LD+LLEE++
Sbjct: 666 VRKDLARTGNWMDLRFDIGCIVSETGEIILDELLEEII 703
>AT3G61380.1 | chr3:22708769-22711279 REVERSE LENGTH=719
Length = 718
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 184/730 (25%), Positives = 302/730 (41%), Gaps = 123/730 (16%)
Query: 173 KQISCSIEKALEAVAEAVITHQSANG------KYTSSSYEARPNEFLDALQLLSANEEFF 226
KQI+CS E + E+V E I H S G + S + +F + ++ L A +E
Sbjct: 51 KQITCSCESSHESVDEEDI-HVSVAGDEHVETEVCKSLVDESEEKFKEIIKRLIAQKEGE 109
Query: 227 LMLLKDPSSRMLQCLQNLYTALGNPMLE--LAEDDKQTKSKVTINSLEQSEV-SKYSV-- 281
+ KD +L+ L + L+ L+ +D QT E+ EV SK
Sbjct: 110 IQTCKD----LLEAFHVLGSEEEESFLKKKLSNEDAQTLGDSKRVEEEKPEVVSKQEAVV 165
Query: 282 --QKTHNFFLKEDKLVMRRPPKLNDSPRGVSRIVILKPSPGRSQTSLISSSAMSSPVQTR 339
++ NFF ++ K RR + + IV+LKP P + V +
Sbjct: 166 IPKRKANFFSRKWKSEERR-----NRSQVAKTIVVLKPGPN------------TLDVDSS 208
Query: 340 ADLQGQEQSDKYARHFS---LRELKRRLRLAISNNRKDVMSSTFQKDDSTQQFILESMST 396
L K R FS + +KRRL+ A+ DV ++ STQ+ E S
Sbjct: 209 TGLHSTANKSKTGRTFSRFLIGLVKRRLQSAVGKKSCDVSVDKRSQNCSTQE---EIQSK 265
Query: 397 SMDSSECEKAEKPSIVDKKTIPEDSGSGMGNDATHCASSFFYEKAKKHLIERLDNQKNDT 456
S + + E+P ++ T + ++ + S Y AKKHL E L N D
Sbjct: 266 SEEKHDVSDKEEPFCDERTTEDGKEETIYSSEDSKKIMSGLYIAAKKHLSEMLANGDIDV 325
Query: 457 SQIVHKSEP--FGKLLSYSENDTFSQTDCPQEDVKLSEDSTASSALLTTEQEDISSNSDP 514
+ + K P GK+LS E S D P+ + S+ TTEQ +I +
Sbjct: 326 N-LPDKEVPRILGKILSLPE--FCSPADSPR---LIPAHDLVSTLSQTTEQPEILQTPET 379
Query: 515 PMKFGELIPLDTSTSANTQLDEFKTDHASHPVKEGTISQELTSEG---IDSMNDATDTPQ 571
+LI D+ +T T S P G ++ + ++ ID +++ T +
Sbjct: 380 SSATNDLIDEDSDKDDDTLF----TIDVSVPRDYGNETENIDNDEESEIDPLSE-TCSSS 434
Query: 572 VSIQIETSTESLEQINTDQCFAEESQTMNALPEVSLHTPEKVNEQFNHSPSAVVGLTKPS 631
VS ++E E +E+ E +N Q + S + T S
Sbjct: 435 VSREVENVDEDVEK-------------------------EMLNHQAHSPASPLESPTTCS 469
Query: 632 ILTFSCSPENADDKEERLSPQSVLDSFLGDGISPSHKTRTQDELSMPSTRILFKEDDTPS 691
+ C E A D + +LSP SVL++ D S + + M + + D+ S
Sbjct: 470 VRLTECK-ETATDAQGKLSPVSVLETLFTDDDSSPTTSTSFSSAGMRMQPLCIRFDEVDS 528
Query: 692 GTPTLQNTPQEAILDDKQARLSFIKVVLEAS----------DFLSEESSEIWYVDGSLLD 741
P N EA +DDK+ L++I+ V++++ F SE+ E+ DG +
Sbjct: 529 PKPEKDNN-VEATIDDKELTLAYIEAVVKSAALSWEELLTRPFYSEQLLELELTDGIVFS 587
Query: 742 TSVLAEVGTLYCLTDDAVFLFDCVEEALCKIRDNFFGCDPWVAYLKHSVRPAPVGTGLIQ 801
++ L DD L+DC+ E L N F PW++++K V+ LI
Sbjct: 588 STQLC---------DDKNLLYDCINEVLMDFCWNEFNPGPWISFVKPEVQ-------LIS 631
Query: 802 EVDNCIDSLVSDE----------VPSTLDRVVLKDL-ESGSWMDLRVDTEEVAIEVWDTL 850
+++ I + V+ E P TLD++V KD+ +GSWMDLR + + + +
Sbjct: 632 DME--IAAKVAQEGVYWHLQPLPFPHTLDQIVKKDMARTGSWMDLRFEIGCLGSYTSEMI 689
Query: 851 LDDLLEEMVF 860
LD+L+EE++
Sbjct: 690 LDELVEEIIM 699
>AT5G02390.1 | chr5:508764-511710 REVERSE LENGTH=836
Length = 835
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 709 QARLSFIKVVLEASDFLSEESSEIWYVDGSLLDTSVLAEVGTLY--CLTDDA-------- 758
+ + ++++ +LE S F + ES +W +D LD V EV T C+ D
Sbjct: 662 KVKFNYVRDILEISGFNAPESLSMWQLDYQPLDPLVYEEVTTTTTGCMFQDPECSRNEEE 721
Query: 759 ------VFLFDCVEEALCKIRDNFFGCDPWVAYLKHSVRPAPVGTGLIQEV---DNCIDS 809
+ LFD + E L +I + + P + P PVG +++EV +C
Sbjct: 722 GGNCNHLLLFDLINEVLIEIYERSYHYYPKPLSSLCKIHPMPVGYSVLKEVWVRISCYLR 781
Query: 810 LVSDEVPSTLDRVVLKDL-ESGSWMDLRVDTEEVAIEVWDTLL 851
+ + D+V+ +DL WMDL+ ++E V IEV D +
Sbjct: 782 YKPYDEQQSFDKVMSRDLSRDDGWMDLQFESECVGIEVEDLIF 824
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,926,105
Number of extensions: 838009
Number of successful extensions: 2199
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2194
Number of HSP's successfully gapped: 6
Length of query: 864
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 757
Effective length of database: 8,173,057
Effective search space: 6187004149
Effective search space used: 6187004149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)