BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0545200 Os10g0545200|AK121804
(301 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0545200 Similar to 4,4-dimethyl-sterol C4-methyl-oxida... 576 e-165
Os03g0108500 Similar to 4,4-dimethyl-sterol C4-methyl-oxida... 356 9e-99
Os11g0707600 Similar to Sterol 4-alpha-methyl-oxidase (Frag... 197 7e-51
Os07g0101500 Similar to Sterol 4-alpha-methyl-oxidase (Frag... 194 7e-50
AK108102 150 8e-37
>Os10g0545200 Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment)
Length = 301
Score = 576 bits (1485), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/301 (94%), Positives = 283/301 (94%)
Query: 1 MLPYXXXXXXXXXXXXXXXXXXSLWFRYSAGIPDYVLFWHNILFLFVVFTLAPLPVALLE 60
MLPY SLWFRYSAGIPDYVLFWHNILFLFVVFTLAPLPVALLE
Sbjct: 1 MLPYATAAEAEAALGRAMTAAESLWFRYSAGIPDYVLFWHNILFLFVVFTLAPLPVALLE 60
Query: 61 LRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYPTVKMVGIHTGLPL 120
LRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYPTVKMVGIHTGLPL
Sbjct: 61 LRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYPTVKMVGIHTGLPL 120
Query: 121 PSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTAPIGFAAPYAHWAEV 180
PSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTAPIGFAAPYAHWAEV
Sbjct: 121 PSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTAPIGFAAPYAHWAEV 180
Query: 181 LILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTKYIPFYGGAEYHDY 240
LILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTKYIPFYGGAEYHDY
Sbjct: 181 LILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTKYIPFYGGAEYHDY 240
Query: 241 HHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKALGQTEGEKADSNGLSYAKL 300
HHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKALGQTEGEKADSNGLSYAKL
Sbjct: 241 HHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKALGQTEGEKADSNGLSYAKL 300
Query: 301 D 301
D
Sbjct: 301 D 301
>Os03g0108500 Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment)
Length = 300
Score = 356 bits (914), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 183/301 (60%), Positives = 211/301 (70%), Gaps = 1/301 (0%)
Query: 1 MLPYXXXXXXXXXXXXXXXXXXSLWFRYSAGIPDYVLFWHNILFLFVVFTLAPLPVALLE 60
MLPY + WFRYSA IPDY L+ HN+ L +V+TLAPLP+ALLE
Sbjct: 1 MLPYATAAEAEAAVGRGLTWAEAAWFRYSAAIPDYCLYCHNVPILLLVYTLAPLPLALLE 60
Query: 61 LRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYPTVKMVGIHTGLPL 120
LR + P KLQP VR F RCY R+ L +GP+QL S+P V+ VGI TGLPL
Sbjct: 61 LRRHLPL-PHKLQPGVRHPPAAFLRCYAATARVLLLAVGPVQLASFPAVRAVGIRTGLPL 119
Query: 121 PSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTAPIGFAAPYAHWAEV 180
PS GE AAQ+ VY LVEDYL YWIHRLLH W Y IHRVHHEFTAP+G+AAPYAHWAE+
Sbjct: 120 PSAGETAAQVAVYLLVEDYLGYWIHRLLHTPWAYHHIHRVHHEFTAPMGYAAPYAHWAEI 179
Query: 181 LILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTKYIPFYGGAEYHDY 240
LILG P+F GPA+ P HM TFWLW VLR +EAI HSGF PF+ TKYIP YGG EYHDY
Sbjct: 180 LILGFPAFAGPAIVPCHMTTFWLWFVLRHLEAIHIHSGFKLPFDPTKYIPLYGGVEYHDY 239
Query: 241 HHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKALGQTEGEKADSNGLSYAKL 300
HH+VG SQSNF+SVFT+CDY+YGTD+GYRYHKA +K+K + EK D NG K
Sbjct: 240 HHFVGGHSQSNFSSVFTFCDYIYGTDRGYRYHKASLSKLKEMAGNHVEKGDENGFGNGKQ 299
Query: 301 D 301
D
Sbjct: 300 D 300
>Os11g0707600 Similar to Sterol 4-alpha-methyl-oxidase (Fragment)
Length = 266
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 142/232 (61%), Gaps = 3/232 (1%)
Query: 47 VVFTLAPLPVALLELRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSY 106
VF L+ LP L E A +K+Q K + RC ++ V P+ ++SY
Sbjct: 33 TVFFLSGLPSLLFERFGLFA--KYKIQKKSNTPSYQN-RCVLRLILYHVCVNLPVMVLSY 89
Query: 107 PTVKMVGIHTGLPLPSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTA 166
P K +G+ + LPLP + +Q+L YF++ED++ YW HR LH +W Y+ +H VHHE+
Sbjct: 90 PAFKFMGLRSSLPLPHWTVIVSQVLFYFVLEDFIFYWGHRALHTKWLYKHVHSVHHEYAT 149
Query: 167 PIGFAAPYAHWAEVLILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLT 226
P G + YAH AE+L LG + VGPAL H+ T WLW+VLR +E +E HSG+ FP++ +
Sbjct: 150 PFGLTSEYAHPAEILFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPS 209
Query: 227 KYIPFYGGAEYHDYHHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAK 278
++P YGG+++HDYHH V N+AS F Y D+L+GTDK YR KA + K
Sbjct: 210 NFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDYRNAKAIEEK 261
>Os07g0101500 Similar to Sterol 4-alpha-methyl-oxidase (Fragment)
Length = 268
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 141/234 (60%), Gaps = 3/234 (1%)
Query: 48 VFTLAPLPVALLELRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYP 107
VF L+ LP L E +K+Q K + RC ++ V PL ++SY
Sbjct: 35 VFFLSGLPSLLFE--RLGLFSKYKIQKKSNTPDYQN-RCVVRLVLYHVCVNLPLTILSYR 91
Query: 108 TVKMVGIHTGLPLPSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTAP 167
T K +G+ + LPLP + +Q+L +F++ED++ YW HR LH +W Y+ +H VHHE+ P
Sbjct: 92 TFKFMGLRSTLPLPHWTVVVSQVLFFFVLEDFIFYWGHRALHTKWLYQHVHSVHHEYATP 151
Query: 168 IGFAAPYAHWAEVLILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTK 227
G + YAH AE+L LG + GPAL H+ T W+W+VLR +E +E HSG+ FP++ +
Sbjct: 152 FGLTSEYAHPAEILFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSN 211
Query: 228 YIPFYGGAEYHDYHHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKA 281
++P YGGAE+HDYHH V N++S F Y D+L+GTDK YR KA + K +
Sbjct: 212 FLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDWLFGTDKDYRKTKALEEKERT 265
>AK108102
Length = 317
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 138/242 (57%), Gaps = 17/242 (7%)
Query: 61 LRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYPTVKMVGIHT-GLP 119
+ A ++ +KLQ + E+ ++C + V+ F V P +P + G+ T +P
Sbjct: 79 IDAMPSMRKYKLQDDKVPTPEQQWKCTKYVLLSHFTVELPQIWSFHPICEYFGLATHEVP 138
Query: 120 LPSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWG--YEKIHRVHHEFTAPIGFAAPYAHW 177
P ++A Q+ ++FL ED +YW HR LH WG Y+ IH+ HHE++AP G AA YAH
Sbjct: 139 FPHWTKIAWQIGLFFLFEDAFHYWAHRALH--WGPLYKHIHKKHHEYSAPFGLAAEYAHP 196
Query: 178 AEVLILGIPSFVGPALAPG-----HMITFWLWIVLRQMEAIETHSGFDFPFNLTKYIPFY 232
EVLILG+ + GP + H++T ++WIVLR +AI+ HSG+DFP ++ +IPF+
Sbjct: 197 LEVLILGMGTIGGPFMLCAFTKDMHILTVYIWIVLRLFQAIDAHSGYDFPISMHNWIPFW 256
Query: 233 GGAEYHDYHH--YVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKALGQTEGEKA 290
GA++HDYHH +VG S S F + D GTD Y+ +A QA+ K KA
Sbjct: 257 AGADHHDYHHQAFVGCYSTS-----FRWWDSFMGTDLSYKRARARQAEKKRQALEGSAKA 311
Query: 291 DS 292
+
Sbjct: 312 AT 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.144 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,051,239
Number of extensions: 431762
Number of successful extensions: 964
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 8
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)