Os10g0545200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment).
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Os10g0545200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.66 | 0.3 | 13.4 | -1.46 | 1.31 | 0.798 | 0.792 | -2.97 | -0.293 | 5.43 | 24.2 | 888 | -- | -- |
| 44.11 | 0.309 | 13.4 | -0.835 | 1.32 | 0.519 | 1.13 | -- | -0.137 | 5.31 | 25.12 | 855 | -- | -- |
| 42.07 | 0.302 | 13.4 | -1.5 | 1.37 | 0.819 | -- | -3.31 | -0.312 | 5.43 | 24.05 | 814 | -- | -- |
| 46.05 | 0.316 | 13.4 | -0.853 | 1.29 | 0.499 | -- | -- | -0.123 | 5.22 | 25.14 | 947 | -- | -- |
| 115.42 | 0.503 | 13.4 | -0.604 | -- | -0.784 | -- | -0.39 | 0.0336 | -- | 24.05 | 814 | -- | -- |
| 50.42 | 0.333 | 13.4 | -0.716 | 1.23 | -- | 0.832 | -- | -0.0699 | 4.93 | -- | -- | -- | -- |
| 52.18 | 0.338 | 13.4 | -0.719 | 1.23 | -- | -- | -- | -0.0741 | 4.88 | -- | -- | -- | -- |
| 114.49 | 0.501 | 13.4 | -0.558 | -- | -0.858 | -- | -- | 0.0138 | -- | 25.14 | 947 | -- | -- |
| 64.29 | 0.373 | 13.3 | -- | 1.23 | 0.194 | -- | -- | -0.00762 | 4.98 | 26.3 | 2454 | -- | -- |
| 132.36 | 0.538 | 13.4 | -0.673 | -- | -- | -- | -- | -0.0423 | -- | -- | -- | -- | -- |
| 65.79 | 0.379 | 13.3 | -- | 1.22 | -- | -- | -- | 0.00594 | 4.9 | -- | -- | -- | -- |
| 122.56 | 0.517 | 13.3 | -- | -- | -0.938 | -- | -- | 0.0798 | -- | 25.14 | 947 | -- | -- |
| 144.31 | 0.561 | 13.4 | -- | -- | -- | -- | -- | 0.0324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 9 | 38.40 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 30 | 39.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 7 |
| 34 | 39.15 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 15 |
| 59 | 39.55 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 6 |
| 121 | 40.16 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 129 | 40.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 9 |
| 152 | 40.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 160 | 40.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 163 | 40.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 177 | 40.52 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 191 | 40.55 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 10 |
| 224 | 40.65 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 8 |
| 232 | 40.66 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 248 | 40.67 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 288 | 40.74 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 355 | 40.80 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 409 | 40.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 469 | 40.92 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 470 | 40.92 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 515 | 41.02 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 604 | 41.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 622 | 41.18 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 653 | 41.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 718 | 41.31 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 726 | 41.32 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 786 | 41.43 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 854 | 41.50 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 9 |
| 866 | 41.52 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 872 | 41.52 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 879 | 41.53 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 884 | 41.53 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 16 |
| 911 | 41.55 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 913 | 41.55 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 18 |
| 968 | 41.60 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 976 | 41.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 980 | 41.61 | humidity | 90 | 90 | < th | dose independent | rect. | 17 | 8 |
| 983 | 41.61 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 13 |
| 993 | 41.62 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 14 |