BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0533500 Os10g0533500|Os10g0533500
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0533500  Similar to Beta-ring hydroxylase (Fragment)         408   e-114
Os03g0125100  Similar to Beta-ring hydroxylase (Fragment)         304   4e-83
Os04g0578400  Similar to Beta-ring hydroxylase (Fragment)         288   3e-78

>Os10g0533500 Similar to Beta-ring hydroxylase (Fragment)
          Length = 292

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/292 (75%), Positives = 219/292 (75%)

Query: 1   MAVARLVVITPAVLLGRTARVSPSAVPRLRPIVAGRRAVAAPTXXXXXXXXXXXXXXXXX 60
           MAVARLVVITPAVLLGRTARVSPSAVPRLRPIVAGRRAVAAPT                 
Sbjct: 1   MAVARLVVITPAVLLGRTARVSPSAVPRLRPIVAGRRAVAAPTRAVLGDGAGVGGEEDAV 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXTYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPAT 120
                                TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPAT
Sbjct: 61  VAVVEEDAVARRAARKRSERRTYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPAT 120

Query: 121 EMVGTFALSVGAAVGMEFXXXXXXXXXXXXSLWHMHESHHRPRDGPFELNDVFAIANAAP 180
           EMVGTFALSVGAAVGMEF            SLWHMHESHHRPRDGPFELNDVFAIANAAP
Sbjct: 121 EMVGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPRDGPFELNDVFAIANAAP 180

Query: 181 AISXXXXXXXXXXXXPGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVA 240
           AIS            PGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVA
Sbjct: 181 AISLLAYGLLNRGLLPGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVA 240

Query: 241 AAHQIHHTDKFEGVPYGLFLGPKELEEVGGTEELDXXXXXXXXXXXAMDAIR 292
           AAHQIHHTDKFEGVPYGLFLGPKELEEVGGTEELD           AMDAIR
Sbjct: 241 AAHQIHHTDKFEGVPYGLFLGPKELEEVGGTEELDKEIKKRIKRKEAMDAIR 292



>Os03g0125100 Similar to Beta-ring hydroxylase (Fragment)
          Length = 319

 Score =  304 bits (779), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 159/244 (65%), Positives = 165/244 (67%), Gaps = 33/244 (13%)

Query: 82  TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGG--------------------------- 114
           TYLVAAVMSSLG TSMAAAAVYYRFAWQME G                            
Sbjct: 76  TYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAAALKFLR 135

Query: 115 ------GDVPATEMVGTFALSVGAAVGMEFXXXXXXXXXXXXSLWHMHESHHRPRDGPFE 168
                 G++P TEM GTFALSVGAAVGMEF            SLWHMHESHHRPRDGPFE
Sbjct: 136 VLDQGSGEIPVTEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPRDGPFE 195

Query: 169 LNDVFAIANAAPAISXXXXXXXXXXXXPGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVG 228
           LNDVFAI NA PA+S            PGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVG
Sbjct: 196 LNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVG 255

Query: 229 PIENVPYFRRVAAAHQIHHTDKFEGVPYGLFLGPKELEEVGGTEELDXXXXXXXXXXXAM 288
           PI NVPYFRRVAAAHQIHH DKFEGVPYGLFLGPKELEEVGG EEL+            +
Sbjct: 256 PIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGPKELEEVGGIEELEKEIKRRIKRKETL 315

Query: 289 DAIR 292
           DAI+
Sbjct: 316 DAIQ 319



>Os04g0578400 Similar to Beta-ring hydroxylase (Fragment)
          Length = 309

 Score =  288 bits (737), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/182 (79%), Positives = 148/182 (81%), Gaps = 2/182 (1%)

Query: 82  TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPATEMVGTFALSVGAAVGMEFXXX 141
           TYLVAAVMSSLGFTSMA AAVYYRF WQ+E  GGDVP TEM GTFALSVGAAVGMEF   
Sbjct: 108 TYLVAAVMSSLGFTSMAVAAVYYRFHWQLE--GGDVPMTEMFGTFALSVGAAVGMEFWAQ 165

Query: 142 XXXXXXXXXSLWHMHESHHRPRDGPFELNDVFAIANAAPAISXXXXXXXXXXXXPGLCFG 201
                    SLWHMHESHHR R+GPFELNDVFAI NA PAIS            PGLCFG
Sbjct: 166 WAHRSLWHASLWHMHESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFG 225

Query: 202 AGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVAAAHQIHHTDKFEGVPYGLFLG 261
           AGLGITLFGMAYMFVHDGLVHRRFPVGPI NVPYFRRVAAAH+IHHTDKFEGVPYGLFLG
Sbjct: 226 AGLGITLFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLFLG 285

Query: 262 PK 263
           PK
Sbjct: 286 PK 287



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,040,325
Number of extensions: 285627
Number of successful extensions: 697
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)