Os03g0125100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-ring hydroxylase (Fragment).
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Os03g0125100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-ring hydroxylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.32 | 0.449 | 11.2 | 0.0956 | 0.301 | -0.516 | 0.259 | -3.65 | 0.421 | 2.55 | 31.17 | 130 | -- | -- |
| 101.24 | 0.469 | 11.2 | 0.0987 | 0.318 | -0.152 | 1.17 | -- | 0.381 | 1.58 | 16.07 | 189 | -- | -- |
| 91.47 | 0.445 | 11.2 | 0.103 | 0.296 | -0.494 | -- | -3.64 | 0.42 | 2.76 | 29.13 | 129 | -- | -- |
| 106.15 | 0.48 | 11.2 | 0.0847 | 0.304 | -0.183 | -- | -- | 0.41 | 2.53 | 3.548 | 122 | -- | -- |
| 93.5 | 0.45 | 11.2 | 0.161 | -- | -0.546 | -- | -2.5 | 0.43 | -- | 0.8674 | 151 | -- | -- |
| 101.58 | 0.473 | 11.2 | 0.103 | 0.375 | -- | 1.19 | -- | 0.4 | 1.55 | -- | -- | -- | -- |
| 106.73 | 0.484 | 11.2 | 0.0624 | 0.393 | -- | -- | -- | 0.392 | 2.49 | -- | -- | -- | -- |
| 107.95 | 0.484 | 11.2 | 0.0763 | -- | -0.467 | -- | -- | 0.42 | -- | -14.38 | 165 | -- | -- |
| 106.15 | 0.48 | 11.2 | -- | 0.273 | -0.236 | -- | -- | 0.397 | 3.19 | 1.14 | 122 | -- | -- |
| 115.83 | 0.503 | 11.2 | 0.0791 | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
| 106.83 | 0.483 | 11.2 | -- | 0.395 | -- | -- | -- | 0.385 | 2.49 | -- | -- | -- | -- |
| 108.1 | 0.484 | 11.2 | -- | -- | -0.468 | -- | -- | 0.413 | -- | -14.11 | 165 | -- | -- |
| 115.99 | 0.503 | 11.2 | -- | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 3 | 86.99 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 13 | 7 |
| 4 | 87.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 5 | 87.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 12 | 87.48 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 13 | 87.51 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 17 | 87.59 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 19 | 87.66 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 7 |
| 21 | 87.72 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 27 | 87.81 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 31 | 87.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 33 | 87.85 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 36 | 87.88 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 46 | 87.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 72 | 88.46 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 79 | 88.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 93 | 88.63 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 19 |
| 95 | 88.64 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 118 | 88.80 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 123 | 88.84 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 130 | 88.89 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 2 | 18 |
| 134 | 88.91 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 10 | 14 |
| 148 | 88.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 177 | 89.08 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 199 | 89.17 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 16 |
| 225 | 89.27 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 285 | 89.56 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 290 | 89.56 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 18 |
| 303 | 89.62 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 317 | 89.67 | temperature | 20 | 90 | > th | dose dependent | sin | 2 | NA |
| 324 | 89.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 372 | 89.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 379 | 89.87 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 17 |
| 381 | 89.88 | wind | 5 | 270 | < th | dose independent | rect. | 10 | 15 |
| 399 | 89.94 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 408 | 89.96 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 414 | 89.97 | temperature | 20 | 10 | > th | dose dependent | sin | 1 | NA |
| 421 | 89.99 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 437 | 90.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 450 | 90.06 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 482 | 90.14 | temperature | 25 | 30 | > th | dose independent | rect. | 8 | 10 |
| 486 | 90.15 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 501 | 90.19 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 20 |
| 513 | 90.22 | wind | 5 | 270 | < th | dose independent | rect. | 19 | 21 |
| 525 | 90.24 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 9 |
| 529 | 90.26 | atmosphere | 1010 | 10 | < th | dose dependent | sin | 18 | NA |
| 550 | 90.29 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 11 | 23 |
| 553 | 90.30 | wind | 7 | 270 | < th | dose independent | rect. | 17 | 23 |
| 587 | 90.38 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 10 |
| 605 | 90.41 | wind | 5 | 270 | < th | dose independent | rect. | 20 | 19 |
| 618 | 90.43 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 624 | 90.45 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 12 | 11 |
| 634 | 90.47 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 638 | 90.48 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 20 |
| 672 | 90.53 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 16 |
| 683 | 90.55 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 7 |
| 756 | 90.67 | wind | 9 | 270 | < th | dose dependent | rect. | 10 | 14 |
| 820 | 90.77 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 16 | 16 |
| 822 | 90.77 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 853 | 90.83 | atmosphere | 1000 | 10 | > th | dose independent | sin | 17 | NA |
| 854 | 90.83 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 4 |
| 856 | 90.83 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 868 | 90.85 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 20 |
| 869 | 90.85 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 892 | 90.89 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 5 | 13 |
| 911 | 90.91 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 23 |
| 921 | 90.92 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 8 | 15 |
| 963 | 90.99 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 10 | 16 |
| 983 | 91.00 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 990 | 91.02 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 5 |