BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0125100 Os03g0125100|Os03g0125100
         (319 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0125100  Similar to Beta-ring hydroxylase (Fragment)         427   e-120
Os04g0578400  Similar to Beta-ring hydroxylase (Fragment)         305   2e-83
Os10g0533500  Similar to Beta-ring hydroxylase (Fragment)         299   2e-81

>Os03g0125100 Similar to Beta-ring hydroxylase (Fragment)
          Length = 319

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/250 (85%), Positives = 214/250 (85%)

Query: 70  KQSERRTYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAA 129
           KQSERRTYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAA
Sbjct: 70  KQSERRTYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAA 129

Query: 130 ALKFLRVLDQGSGEIPVTEMFGTFALSVGAAVGMEFXXXXXXXXXXXXSLWHMHESHHRP 189
           ALKFLRVLDQGSGEIPVTEMFGTFALSVGAAVGMEF            SLWHMHESHHRP
Sbjct: 130 ALKFLRVLDQGSGEIPVTEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRP 189

Query: 190 RDGPFELNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVH 249
           RDGPFELNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVH
Sbjct: 190 RDGPFELNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVH 249

Query: 250 RRFPVGPIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGPXXXXXXXXXXXXXXXXXXXX 309
           RRFPVGPIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGP                    
Sbjct: 250 RRFPVGPIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGPKELEEVGGIEELEKEIKRRI 309

Query: 310 XXXXTLDAIQ 319
               TLDAIQ
Sbjct: 310 KRKETLDAIQ 319



>Os04g0578400 Similar to Beta-ring hydroxylase (Fragment)
          Length = 309

 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 165/220 (75%), Gaps = 35/220 (15%)

Query: 70  KQSERRTYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAA 129
           K SERRTYLVAAVMSSLG TSMA AAVYYRF WQ+E                        
Sbjct: 102 KLSERRTYLVAAVMSSLGFTSMAVAAVYYRFHWQLE------------------------ 137

Query: 130 ALKFLRVLDQGSGEIPVTEMFGTFALSVGAAVGMEFXXXXXXXXXXXXSLWHMHESHHRP 189
                       G++P+TEMFGTFALSVGAAVGMEF            SLWHMHESHHR 
Sbjct: 138 -----------GGDVPMTEMFGTFALSVGAAVGMEFWAQWAHRSLWHASLWHMHESHHRA 186

Query: 190 RDGPFELNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVH 249
           R+GPFELNDVFAITNAVPA+SLLAYGFF RG+VPGLCFGAGLGITLFGMAYMFVHDGLVH
Sbjct: 187 REGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFGAGLGITLFGMAYMFVHDGLVH 246

Query: 250 RRFPVGPIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGP 289
           RRFPVGPIANVPYFRRVAAAH+IHH DKFEGVPYGLFLGP
Sbjct: 247 RRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLFLGP 286



>Os10g0533500 Similar to Beta-ring hydroxylase (Fragment)
          Length = 292

 Score =  299 bits (765), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/214 (71%), Positives = 157/214 (73%), Gaps = 33/214 (15%)

Query: 76  TYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAAALKFLR 135
           TYLVAAVMSSLG TSMAAAAVYYRFAWQME G                            
Sbjct: 82  TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGG--------------------------- 114

Query: 136 VLDQGSGEIPVTEMFGTFALSVGAAVGMEFXXXXXXXXXXXXSLWHMHESHHRPRDGPFE 195
                 G++P TEM GTFALSVGAAVGMEF            SLWHMHESHHRPRDGPFE
Sbjct: 115 ------GDVPATEMVGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPRDGPFE 168

Query: 196 LNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVG 255
           LNDVFAI NA PA+SLLAYG   RGL+PGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVG
Sbjct: 169 LNDVFAIANAAPAISLLAYGLLNRGLLPGLCFGAGLGITLFGMAYMFVHDGLVHRRFPVG 228

Query: 256 PIANVPYFRRVAAAHQIHHMDKFEGVPYGLFLGP 289
           PI NVPYFRRVAAAHQIHH DKFEGVPYGLFLGP
Sbjct: 229 PIENVPYFRRVAAAHQIHHTDKFEGVPYGLFLGP 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,441,560
Number of extensions: 298445
Number of successful extensions: 635
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 218
Effective length of database: 11,762,187
Effective search space: 2564156766
Effective search space used: 2564156766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)