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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0533500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-ring hydroxylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.44 (0.0641) R2 : 0.85
β1 : -2.74 (0.249) R2dD : 0.0493 R2D : 0.0843
β2 : 6.88 (0.152) R2dC : 0.68 R2C : 0.645
β3 : 1.75 (0.195) R2dE : 0.0318 R2E : 0.0137
β4 : -5.85 (0.601) R2dD*C : 0.0316 R2D*C : 0.0457
β5 : 5.67 (0.765) R2dD*E : 0.0223 R2D*E : 0.0532
γ1 : -1.21 (0.141) R2dN8 : 0.0366 R2N8 : -0.00944
σ : 1.18
deviance : 625.91
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_____
C
peak time of C : 9.75
E
wheather : radiation
threshold : 35.68
memory length : 12026
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.96
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
625.91 1.18 7.44 -2.74 6.88 1.75 -5.85 5.67 -1.21 9.75 35.68 12026 7.96 --
707.93 1.24 7.45 -2.96 6.87 1.82 -6.18 -- -1.23 9.76 36.03 12722 9.08 --
755.26 1.28 7.45 -2.83 6.89 1.68 -- 6.06 -1.21 9.73 35.9 12059 8.35 --
834.3 1.35 7.49 -3.15 6.91 1.92 -- -- -1.4 9.75 41.27 13499 9.26 --
3519.48 2.78 7.48 -4.13 -- 4.36 -- -7.54 -0.966 -- 42.78 8831 8.71 --
829.84 1.35 7.27 -3.81 6.75 -- -6.05 -- -0.875 9.72 -- -- -- --
968.78 1.46 7.27 -4.04 6.78 -- -- -- -0.886 9.73 -- -- -- --
3504.58 2.77 7.42 -3.96 -- 4.47 -- -- -0.689 -- 51.22 1661 9.69 --
1099.73 1.54 7.25 -- 6.86 3.1 -- -- -0.968 9.67 49.75 18016 8.12 --
3703.6 2.84 7.46 -4.1 -- -- -- -- -0.877 -- -- -- -- --
1398.41 1.75 7.17 -- 6.79 -- -- -- -0.436 9.77 -- -- -- --
3795.23 2.87 7.34 -- -- 5.32 -- -- -0.475 -- 56.59 169 10.7 --
4147.1 3.01 7.36 -- -- -- -- -- -0.422 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 610.51 wind 3.0 43200 < th dose dependent rect. 3 2
3 614.64 precipitation 0.1 43200 > th dose dependent rect. 4 14
7 616.02 wind 5.0 43200 > th dose independent rect. 8 4
8 616.17 wind 5.0 43200 > th dose independent rect. 5 8
9 616.25 wind 5.0 43200 > th dose independent rect. 7 6
10 616.56 temperature 25.0 14400 > th dose dependent rect. 22 1
11 616.62 wind 5.0 43200 < th dose independent rect. 5 8
13 616.70 precipitation 0.1 43200 > th dose dependent rect. 8 17
22 617.24 wind 5.0 43200 < th dose independent rect. 7 6
23 617.28 precipitation 0.1 43200 > th dose dependent rect. 4 19
24 617.35 precipitation 0.1 43200 > th dose dependent rect. 4 21
31 617.60 wind 5.0 43200 < th dose independent rect. 8 4
34 617.65 precipitation 0.1 43200 > th dose dependent sin 0 NA
43 617.79 precipitation 0.1 43200 > th dose dependent rect. 14 15
45 617.88 precipitation 0.1 43200 > th dose dependent sin 16 NA
50 617.97 temperature 25.0 14400 > th dose dependent rect. 21 3
56 618.10 precipitation 0.1 43200 > th dose dependent rect. 14 12
77 618.41 precipitation 0.1 43200 < th dose independent rect. 4 14
78 618.41 precipitation 0.1 43200 < th dose dependent rect. 4 14
87 618.61 precipitation 0.1 43200 > th dose independent rect. 4 14
93 618.70 precipitation 0.1 43200 > th dose dependent rect. 8 21
151 619.58 precipitation 0.1 43200 < th dose independent rect. 4 18
152 619.58 precipitation 0.1 43200 < th dose dependent rect. 4 18
156 619.66 precipitation 0.1 43200 < th dose independent rect. 16 6
158 619.66 precipitation 0.1 43200 < th dose dependent rect. 16 6
161 619.68 precipitation 0.1 43200 > th dose dependent rect. 20 22
163 619.71 precipitation 0.1 43200 > th dose independent rect. 4 18
168 619.77 wind 1.0 43200 > th dose independent rect. 3 1
170 619.81 precipitation 0.1 43200 > th dose independent rect. 16 6
239 620.88 precipitation 0.1 43200 > th dose dependent rect. 24 22
244 620.96 precipitation 0.1 43200 > th dose dependent rect. 14 23
247 620.98 precipitation 0.1 43200 > th dose independent rect. 8 13
257 621.10 precipitation 0.1 43200 < th dose independent rect. 8 13
258 621.10 precipitation 0.1 43200 < th dose dependent rect. 8 13
319 621.64 wind 1.0 43200 < th dose independent rect. 3 1
341 621.91 precipitation 0.1 43200 > th dose independent rect. 12 6
347 621.93 precipitation 0.1 43200 < th dose independent rect. 12 6
348 621.93 precipitation 0.1 43200 < th dose dependent rect. 12 6
355 622.01 precipitation 0.1 43200 > th dose dependent no NA NA
367 622.10 precipitation 0.1 43200 > th dose dependent rect. 11 23
384 622.35 precipitation 0.1 43200 > th dose dependent rect. 19 4
398 622.53 precipitation 0.1 43200 > th dose independent sin 21 NA
399 622.53 precipitation 0.1 43200 < th dose independent sin 21 NA
400 622.53 precipitation 0.1 43200 < th dose dependent sin 21 NA
421 622.72 precipitation 0.1 43200 > th dose dependent rect. 24 18
456 622.97 radiation 10.0 14400 < th dose dependent rect. 7 13
457 622.97 radiation 10.0 14400 < th dose dependent rect. 7 21
534 623.73 radiation 10.0 14400 > th dose independent rect. 14 3
546 623.85 wind 1.0 43200 > th dose dependent rect. 3 1
547 623.85 radiation 40.0 14400 > th dose dependent rect. 13 3
590 623.93 temperature 20.0 43200 > th dose independent rect. 20 1
656 624.63 radiation 10.0 14400 > th dose independent sin 15 NA
694 624.87 wind 3.0 43200 > th dose dependent rect. 8 2
760 625.24 radiation 20.0 14400 < th dose dependent rect. 15 2
768 625.34 precipitation 0.1 43200 < th dose independent rect. 19 3
770 625.34 precipitation 0.1 43200 < th dose dependent rect. 19 3
780 625.44 precipitation 0.1 43200 > th dose independent rect. 19 3
796 625.66 radiation 10.0 14400 < th dose dependent sin 22 NA
814 625.90 radiation 20.0 14400 < th dose dependent rect. 13 5
815 625.92 radiation 20.0 14400 < th dose dependent sin 16 NA
817 625.94 wind 3.0 43200 > th dose dependent rect. 7 5
821 625.98 radiation 20.0 14400 < th dose dependent rect. 13 15
822 625.99 radiation 20.0 14400 < th dose dependent rect. 13 7
829 626.01 radiation 10.0 14400 < th dose dependent rect. 11 23
842 626.10 radiation 10.0 14400 < th dose dependent rect. 15 23
876 626.28 radiation 10.0 14400 < th dose dependent rect. 2 18
910 626.32 radiation 10.0 14400 < th dose dependent no NA NA
933 626.35 radiation 1.0 14400 > th dose dependent rect. 15 2
964 626.47 radiation 40.0 14400 > th dose dependent sin 13 NA
977 626.57 radiation 40.0 14400 > th dose independent rect. 13 3