BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0533500 Os10g0533500|Os10g0533500
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25700.1  | chr4:13094142-13095866 REVERSE LENGTH=311          288   3e-78
AT5G52570.1  | chr5:21334911-21336887 REVERSE LENGTH=304          267   5e-72

>AT4G25700.1 | chr4:13094142-13095866 REVERSE LENGTH=311
          Length = 310

 Score =  288 bits (736), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 153/194 (78%), Gaps = 2/194 (1%)

Query: 82  TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPATEMVGTFALSVGAAVGMEFXXX 141
           TYL+AA++SS G TSMA  AVYYRF+WQME  GG++   EM GTFALSVGAAVGMEF   
Sbjct: 97  TYLIAAMLSSFGITSMAVMAVYYRFSWQME--GGEISMLEMFGTFALSVGAAVGMEFWAR 154

Query: 142 XXXXXXXXXSLWHMHESHHRPRDGPFELNDVFAIANAAPAISXXXXXXXXXXXXPGLCFG 201
                    SLW+MHESHH+PR+GPFELNDVFAI NA PAI             PGLCFG
Sbjct: 155 WAHRALWHASLWNMHESHHKPREGPFELNDVFAIVNAGPAIGLLSYGFFNKGLVPGLCFG 214

Query: 202 AGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVAAAHQIHHTDKFEGVPYGLFLG 261
           AGLGIT+FG+AYMFVHDGLVH+RFPVGPI +VPY R+VAAAHQ+HHTDKF GVPYGLFLG
Sbjct: 215 AGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYLRKVAAAHQLHHTDKFNGVPYGLFLG 274

Query: 262 PKELEEVGGTEELD 275
           PKELEEVGG EELD
Sbjct: 275 PKELEEVGGNEELD 288



>AT5G52570.1 | chr5:21334911-21336887 REVERSE LENGTH=304
          Length = 303

 Score =  267 bits (682), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 129/181 (71%), Positives = 141/181 (77%), Gaps = 2/181 (1%)

Query: 82  TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPATEMVGTFALSVGAAVGMEFXXX 141
           TYL+AAVMSS G TSMA  AVYYRF+WQM+  GG+V   EM GTFALSVGAAVGMEF   
Sbjct: 95  TYLIAAVMSSFGITSMAIMAVYYRFSWQMK--GGEVSVLEMFGTFALSVGAAVGMEFWAR 152

Query: 142 XXXXXXXXXSLWHMHESHHRPRDGPFELNDVFAIANAAPAISXXXXXXXXXXXXPGLCFG 201
                    SLW+MHESHH+PR+G FELNDVFAI NA PAI             PGLCFG
Sbjct: 153 WAHRALWHDSLWNMHESHHKPREGAFELNDVFAITNAVPAIGLLYYGFLNKGLVPGLCFG 212

Query: 202 AGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVAAAHQIHHTDKFEGVPYGLFLG 261
           AGLGIT+FGMAYMFVHDGLVH+RFPVGPI NVPY R+VAAAHQ+HHTDKF+GVPYGLFLG
Sbjct: 213 AGLGITMFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLG 272

Query: 262 P 262
           P
Sbjct: 273 P 273



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,482,402
Number of extensions: 145378
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)