BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0532800 Os10g0532800|AK069346
         (193 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0532800  Conserved hypothetical protein                      402   e-113
Os03g0625500  Cupredoxin domain containing protein                260   4e-70
Os11g0527300  Hypothetical protein                                 69   2e-12

>Os10g0532800 Conserved hypothetical protein
          Length = 193

 Score =  402 bits (1034), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MTFYLSKQNFVLFHPSAVSLVILSLRMNDIFFPFIFTVQVESAKEPYPLVINPKYLKNHL 60
           MTFYLSKQNFVLFHPSAVSLVILSLRMNDIFFPFIFTVQVESAKEPYPLVINPKYLKNHL
Sbjct: 1   MTFYLSKQNFVLFHPSAVSLVILSLRMNDIFFPFIFTVQVESAKEPYPLVINPKYLKNHL 60

Query: 61  LPEHCHQSIKHVTVTGFCHTQELVELIFYILENATSLQCLTLDNRIRGFEKDLVACITQD 120
           LPEHCHQSIKHVTVTGFCHTQELVELIFYILENATSLQCLTLDNRIRGFEKDLVACITQD
Sbjct: 61  LPEHCHQSIKHVTVTGFCHTQELVELIFYILENATSLQCLTLDNRIRGFEKDLVACITQD 120

Query: 121 AGTCDYQEWWKNFGAKEIILHFFRRESYPKSYWDAYCSYVAIRKYIIGRVPSSVELKIYQ 180
           AGTCDYQEWWKNFGAKEIILHFFRRESYPKSYWDAYCSYVAIRKYIIGRVPSSVELKIYQ
Sbjct: 121 AGTCDYQEWWKNFGAKEIILHFFRRESYPKSYWDAYCSYVAIRKYIIGRVPSSVELKIYQ 180

Query: 181 LCLLMKLYPVFQR 193
           LCLLMKLYPVFQR
Sbjct: 181 LCLLMKLYPVFQR 193



>Os03g0625500 Cupredoxin domain containing protein
          Length = 369

 Score =  260 bits (665), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 25  LRMNDIFFPFIFTVQVESAKEPYPLVINPKYLKNHLLPEHCHQSIKHVTVTGFCHTQELV 84
           LR + +   FI  V+ ESAKEPYPLV NPKYLK HL PEH HQSIKHVTVTGFCH QELV
Sbjct: 195 LRASPVLETFILHVE-ESAKEPYPLVFNPKYLKIHLSPEHSHQSIKHVTVTGFCHKQELV 253

Query: 85  ELIFYILENATSLQCLTLDNRIRGFEKDLVACITQDAGTCDYQEWWKNFGAKEIILHFFR 144
           ELIFYILENATSLQCLTLDNRIRGF KDLVACITQD GT DYQEWW NFG KE ILHFFR
Sbjct: 254 ELIFYILENATSLQCLTLDNRIRGFGKDLVACITQDTGTRDYQEWWNNFGVKERILHFFR 313

Query: 145 RESYPKSYWDAYCSYVAIRKYIIGRVPSSVELKI 178
           RE YPKS W+AYCSYVAIRKYII RVPSSVELKI
Sbjct: 314 REFYPKSDWEAYCSYVAIRKYIIERVPSSVELKI 347



>Os11g0527300 Hypothetical protein
          Length = 261

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 24/166 (14%)

Query: 31  FFPFIFTVQVESAKEPYPLVINPKYLKN----------HLLPEHCHQSIKHVTVTGFCHT 80
           FF  +F +    A E + L ++    KN            LP+  + ++K+V +TG   +
Sbjct: 92  FFSLVFFLDASPALETFVLHLDSVGTKNDRILEDSSELRKLPKCNYSNLKNVKITGLMSS 151

Query: 81  QELVELIFYILENATSLQCLTLDNRIRGFEKDLVACITQDAG----TCDYQEWWKNFGAK 136
           + LVELI +IL+N  SL+ LTLD RI GF+ ++   I+ D G    T D  E        
Sbjct: 152 KTLVELISHILDNTPSLEFLTLDTRIYGFKYEIRRFISWDCGIMMTTDDRME-------S 204

Query: 137 EIILHFFRRESYPKSYWDAYCSYVAIRKYIIGRVPSSVELKIYQLC 182
           E+       +S      +AY +   IR+YI G+VPS+V  ++ + C
Sbjct: 205 ELDRELLMSDS---DLIEAYRAPQVIRRYIEGKVPSTVNFEVIEPC 247



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,113,752
Number of extensions: 239095
Number of successful extensions: 653
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 3
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 153 (63.5 bits)