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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0527300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0274) R2 : 0.407
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.02 (0.0577) R2dN8 : 0.525 R2N8 : 0.407
σ : 0.516
deviance : 122.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.07 0.488 3.42 0.519 0.242 -0.723 0.474 -1.86 1.01 19.9 24.81 1457 -- --
110.56 0.49 3.46 0.229 0.144 -0.6 0.512 -- 0.942 19.8 25.1 688 -- --
108.69 0.486 3.42 0.502 0.24 -0.72 -- -1.84 1.01 20.2 24.8 1496 -- --
111.16 0.491 3.46 0.18 0.157 -0.584 -- -- 0.941 19.8 25.08 688 -- --
110.13 0.489 3.43 0.412 -- -0.7 -- -1.36 0.986 -- 25.4 603 -- --
115.61 0.504 3.44 0.356 0.238 -- 0.428 -- 1.06 20.2 -- -- -- --
116.16 0.505 3.44 0.343 0.237 -- -- -- 1.06 20.5 -- -- -- --
112.34 0.494 3.46 0.161 -- -0.655 -- -- 0.918 -- 25.56 610 -- --
111.92 0.493 3.47 -- 0.152 -0.645 -- -- 0.908 19.8 25.1 713 -- --
119.29 0.51 3.43 0.342 -- -- -- -- 1.06 -- -- -- -- --
119.26 0.511 3.44 -- 0.235 -- -- -- 1.02 20.6 -- -- -- --
112.95 0.495 3.47 -- -- -0.716 -- -- 0.889 -- 25.5 616 -- --
122.38 0.516 3.44 -- -- -- -- -- 1.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.47 humidity 80.0 720 < th dose independent rect. 11 1
2 100.90 wind 3.0 43200 < th dose dependent rect. 22 8
4 101.12 precipitation 0.1 14400 > th dose dependent rect. 17 1
14 101.56 wind 3.0 14400 < th dose dependent rect. 23 4
16 101.67 wind 3.0 14400 < th dose dependent rect. 23 2
18 101.77 wind 3.0 14400 < th dose independent rect. 24 2
19 101.82 wind 3.0 14400 < th dose dependent rect. 5 1
34 101.95 wind 3.0 43200 < th dose dependent rect. 1 1
37 102.00 precipitation 0.1 4320 > th dose dependent rect. 2 15
42 102.15 precipitation 0.1 14400 > th dose independent rect. 17 1
59 102.46 precipitation 0.1 4320 > th dose independent rect. 7 1
60 102.46 wind 3.0 14400 > th dose independent rect. 24 2
61 102.46 precipitation 0.1 4320 > th dose dependent rect. 7 1
65 102.47 wind 1.0 1440 < th dose independent rect. 12 7
69 102.53 precipitation 0.1 4320 > th dose independent rect. 3 14
70 102.53 precipitation 0.1 4320 < th dose independent rect. 3 14
72 102.53 precipitation 0.1 4320 < th dose dependent rect. 3 14
75 102.55 precipitation 0.1 14400 < th dose independent rect. 17 1
76 102.55 precipitation 0.1 14400 < th dose dependent rect. 17 1
80 102.61 precipitation 0.1 4320 < th dose independent rect. 7 1
81 102.61 precipitation 0.1 4320 < th dose dependent rect. 7 1
88 102.69 wind 1.0 14400 > th dose dependent rect. 24 2
92 102.74 wind 1.0 43200 > th dose independent rect. 22 15
94 102.75 humidity 70.0 1440 > th dose dependent rect. 11 1
102 102.79 wind 1.0 4320 > th dose independent rect. 17 2
106 102.81 humidity 80.0 1440 > th dose independent rect. 11 1
112 102.82 precipitation 0.1 4320 > th dose dependent rect. 3 11
121 102.86 wind 1.0 1440 < th dose independent rect. 9 10
122 102.86 wind 1.0 1440 < th dose dependent rect. 12 7
124 102.88 wind 3.0 14400 < th dose independent rect. 22 9
125 102.92 precipitation 0.1 1440 > th dose independent rect. 5 3
130 102.95 precipitation 0.1 4320 > th dose dependent rect. 4 2
152 103.08 precipitation 0.1 4320 < th dose independent rect. 4 2
153 103.08 precipitation 0.1 4320 < th dose dependent rect. 4 2
168 103.18 precipitation 0.1 4320 > th dose dependent rect. 3 5
172 103.20 wind 1.0 14400 > th dose dependent rect. 22 8
184 103.25 precipitation 0.1 14400 > th dose independent rect. 14 3
191 103.27 precipitation 0.1 14400 > th dose dependent rect. 14 3
201 103.31 precipitation 0.1 14400 < th dose independent rect. 14 3
203 103.31 precipitation 0.1 14400 < th dose dependent rect. 14 3
209 103.33 wind 3.0 14400 < th dose dependent sin 10 NA
215 103.35 precipitation 0.1 14400 < th dose independent rect. 12 5
216 103.35 precipitation 0.1 14400 < th dose dependent rect. 12 5
225 103.37 temperature 20.0 10 > th dose dependent rect. 16 10
228 103.38 wind 1.0 43200 < th dose independent rect. 21 16
233 103.39 wind 3.0 14400 > th dose independent rect. 22 9
253 103.44 wind 1.0 1440 > th dose independent rect. 12 7
261 103.45 wind 1.0 43200 < th dose independent rect. 19 18
274 103.49 precipitation 0.1 4320 < th dose independent rect. 3 11
277 103.49 precipitation 0.1 4320 < th dose dependent rect. 3 11
282 103.50 wind 1.0 1440 < th dose dependent rect. 12 2
298 103.52 wind 1.0 14400 > th dose dependent rect. 22 6
301 103.53 wind 1.0 1440 < th dose dependent rect. 9 10
304 103.54 wind 1.0 1440 < th dose independent rect. 12 2
307 103.54 precipitation 0.1 4320 > th dose independent rect. 3 11
328 103.58 wind 1.0 43200 > th dose independent rect. 16 19
330 103.59 wind 1.0 720 > th dose independent rect. 11 10
360 103.66 wind 3.0 14400 > th dose independent rect. 22 6
365 103.67 wind 1.0 43200 < th dose independent rect. 16 21
374 103.69 wind 1.0 14400 > th dose dependent rect. 5 1
393 103.75 temperature 20.0 90 > th dose dependent rect. 17 9
407 103.77 precipitation 0.1 4320 > th dose dependent rect. 7 10
409 103.78 wind 3.0 14400 < th dose independent rect. 5 1
432 103.82 wind 1.0 1440 < th dose independent rect. 9 6
457 103.88 wind 1.0 1440 > th dose independent rect. 9 10
475 103.91 temperature 20.0 10 > th dose dependent rect. 18 8
488 103.93 wind 1.0 43200 > th dose independent rect. 11 20
495 103.95 wind 3.0 14400 > th dose independent rect. 5 1
524 104.00 wind 9.0 14400 > th dose independent rect. 10 1
527 104.00 wind 1.0 43200 > th dose independent rect. 15 16
537 104.02 wind 1.0 43200 < th dose independent rect. 11 20
542 104.03 wind 1.0 1440 > th dose independent rect. 12 1
575 104.08 humidity 90.0 4320 > th dose dependent rect. 7 2
584 104.10 humidity 80.0 14400 > th dose independent rect. 6 1
594 104.11 wind 9.0 14400 < th dose independent rect. 10 1
605 104.13 wind 1.0 43200 > th dose independent rect. 4 9
620 104.16 wind 1.0 43200 > th dose independent sin 9 NA
654 104.23 wind 1.0 4320 < th dose independent rect. 17 2
696 104.30 wind 1.0 1440 < th dose dependent rect. 9 6
708 104.31 precipitation 0.1 14400 > th dose independent rect. 4 16
715 104.32 precipitation 0.1 14400 < th dose independent rect. 4 16
720 104.32 precipitation 0.1 14400 < th dose dependent rect. 4 16
725 104.34 precipitation 0.1 1440 < th dose independent rect. 5 8
733 104.34 precipitation 0.1 1440 < th dose dependent rect. 5 8
744 104.37 humidity 80.0 14400 < th dose independent rect. 6 1
754 104.38 precipitation 0.1 4320 > th dose dependent sin 5 NA
813 104.47 wind 1.0 43200 > th dose independent rect. 19 12
844 104.51 wind 1.0 14400 > th dose independent rect. 4 3
854 104.51 precipitation 0.1 4320 > th dose dependent rect. 18 23
870 104.54 wind 1.0 43200 < th dose independent rect. 15 14
898 104.58 temperature 25.0 90 < th dose independent rect. 15 14
902 104.59 precipitation 0.1 4320 > th dose independent sin 3 NA
905 104.60 precipitation 0.1 4320 < th dose independent sin 3 NA
906 104.60 wind 3.0 14400 < th dose independent rect. 4 3
911 104.60 precipitation 0.1 4320 < th dose dependent sin 3 NA
936 104.65 wind 1.0 1440 > th dose independent rect. 9 5
937 104.65 precipitation 0.1 14400 > th dose independent rect. 13 7
944 104.66 wind 9.0 14400 < th dose independent rect. 12 1
947 104.66 precipitation 0.1 14400 < th dose independent rect. 12 8
949 104.66 precipitation 0.1 14400 < th dose dependent rect. 12 8
953 104.67 precipitation 0.1 14400 > th dose independent rect. 7 10
982 104.71 precipitation 0.1 14400 < th dose independent rect. 7 10
989 104.71 precipitation 0.1 14400 < th dose dependent rect. 7 10