Os03g0625500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os03g0625500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.08 | 0.705 | 5.96 | 1.96 | 0.649 | 1.66 | -1.32 | 1.61 | 1.17 | 4.96 | 72.01 | 1233 | -- | -- |
| 230.26 | 0.707 | 5.94 | 2.19 | 0.655 | 1.74 | -1.41 | -- | 1.22 | 4.71 | 72 | 1223 | -- | -- |
| 229.23 | 0.705 | 5.96 | 1.94 | 0.646 | 1.68 | -- | 1.76 | 1.17 | 4.53 | 72.16 | 1230 | -- | -- |
| 235.48 | 0.715 | 5.93 | 2.21 | 0.657 | 1.79 | -- | -- | 1.24 | 4.18 | 72 | 1200 | -- | -- |
| 247.56 | 0.733 | 5.97 | 1.97 | -- | 1.67 | -- | 1.5 | 1.18 | -- | 72.05 | 1523 | -- | -- |
| 337.1 | 0.861 | 5.98 | 1.89 | 0.522 | -- | -1.43 | -- | 1.02 | 6.31 | -- | -- | -- | -- |
| 341.35 | 0.865 | 5.97 | 1.87 | 0.526 | -- | -- | -- | 1.02 | 7.14 | -- | -- | -- | -- |
| 251.16 | 0.738 | 5.94 | 2.15 | -- | 1.89 | -- | -- | 1.23 | -- | 72.41 | 1706 | -- | -- |
| 360.57 | 0.884 | 5.98 | -- | 0.683 | 1.77 | -- | -- | 1.02 | 4.77 | 74.01 | 1227 | -- | -- |
| 355.94 | 0.882 | 5.99 | 1.88 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 433.94 | 0.974 | 6.02 | -- | 0.546 | -- | -- | -- | 0.816 | 6.92 | -- | -- | -- | -- |
| 345.71 | 0.866 | 5.99 | -- | -- | 2.49 | -- | -- | 1.05 | -- | 82.54 | 2072 | -- | -- |
| 449.58 | 0.99 | 6.03 | -- | -- | -- | -- | -- | 0.825 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.77 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 2 | 223.11 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 3 | 223.95 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 5 | 224.12 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 28 | 225.01 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 30 | 225.02 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 54 | 226.29 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 86 | 227.40 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 89 | 227.47 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 90 | 227.51 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 99 | 227.54 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 140 | 228.80 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 146 | 228.98 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 151 | 229.10 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 161 | 229.37 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 162 | 229.37 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 163 | 229.37 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 174 | 229.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 216 | 229.87 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 239 | 230.21 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 257 | 230.30 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 260 | 230.36 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 283 | 230.64 | humidity | 70.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 286 | 230.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 302 | 230.86 | humidity | 70.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 303 | 230.86 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 307 | 230.90 | humidity | 70.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 343 | 231.38 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 430 | 231.97 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 520 | 232.66 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 529 | 232.73 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 533 | 232.77 | humidity | 70.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 537 | 232.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 569 | 232.85 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 601 | 232.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 604 | 232.91 | humidity | 70.0 | 1440 | > th | dose independent | no | NA | NA |
| 626 | 232.95 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 721 | 233.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 737 | 233.60 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 791 | 233.93 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 807 | 233.96 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 852 | 234.17 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 954 | 234.65 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 967 | 234.70 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 971 | 234.71 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 993 | 234.79 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 8 |