BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0510500 Os10g0510500|AK109491
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0510500  Auxin responsive SAUR protein family protein        173   3e-44
Os09g0338801                                                       72   1e-13
Os04g0662400  Auxin responsive SAUR protein family protein         64   3e-11
Os06g0714300  Auxin responsive SAUR protein family protein         62   9e-11
Os01g0924966  Auxin responsive SAUR protein family protein         62   1e-10

>Os10g0510500 Auxin responsive SAUR protein family protein
          Length = 125

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/109 (81%), Positives = 89/109 (81%)

Query: 17  MVVVAPKGCVTVRVGAEGEEQRRFAVPLAHLKHPLFGALLEEAEREYGFAQRGAIAIPCR 76
           MVVVAPKGCVTVRVGAEGEEQRRFAVPLAHLKHPLFGALLEEAEREYGFAQRGAIAIPCR
Sbjct: 17  MVVVAPKGCVTVRVGAEGEEQRRFAVPLAHLKHPLFGALLEEAEREYGFAQRGAIAIPCR 76

Query: 77  VDRFVHVEHLIVQXXXXXXXXXXXXXXXXXXXXTQIHLHLPRFAGCFRA 125
           VDRFVHVEHLIVQ                    TQIHLHLPRFAGCFRA
Sbjct: 77  VDRFVHVEHLIVQDLHGAAASHLLDLDSSSHHHTQIHLHLPRFAGCFRA 125



>Os09g0338801 
          Length = 73

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 39/49 (79%)

Query: 23 KGCVTVRVGAEGEEQRRFAVPLAHLKHPLFGALLEEAEREYGFAQRGAI 71
          K CVTVRVG EGEEQRRF V L H KHPL G L++EAE EYGFA++G I
Sbjct: 4  KPCVTVRVGVEGEEQRRFTVLLGHPKHPLLGELIDEAEHEYGFAKQGTI 52



>Os04g0662400 Auxin responsive SAUR protein family protein
          Length = 153

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 22  PKGCVTVRVGAEGEEQRRFAVPLAHLKHPLFGALLEEAEREYGF--AQRGAIAIPCRVDR 79
           P G V VRVG  GE+ RRF V +AHL HP F  LL +AE EYGF     G +A+PC  D 
Sbjct: 41  PAGHVAVRVGGGGEDARRFVVRVAHLNHPAFRELLRQAEEEYGFPSGASGPVALPCDEDH 100

Query: 80  FVHV 83
           F  V
Sbjct: 101 FRDV 104



>Os06g0714300 Auxin responsive SAUR protein family protein
          Length = 141

 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 36/48 (75%)

Query: 40 FAVPLAHLKHPLFGALLEEAEREYGFAQRGAIAIPCRVDRFVHVEHLI 87
          F VP+ +LKHPLF  LL+EAE E+GF Q+GAI IPC VD F  V+ +I
Sbjct: 52 FVVPVGYLKHPLFVGLLKEAEEEFGFEQKGAITIPCGVDHFRRVQGII 99



>Os01g0924966 Auxin responsive SAUR protein family protein
          Length = 173

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 24  GCVTVRVGAEGEEQRRFAVPLAHLKHPLFGALLEEAEREYGFAQRGAIAIPCRVDRFVHV 83
           GC +V VG E E   RF V   +  HPLF  LL++AEREYG+A +G +A+PC VD F+ V
Sbjct: 45  GCFSVYVGPERE---RFVVRTEYANHPLFRRLLDDAEREYGYAAQGPLALPCAVDAFLDV 101



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,088,265
Number of extensions: 96096
Number of successful extensions: 257
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 9
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)