FiT-DB / Search/ Help/ Sample detail

Os06g0714300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin responsive SAUR protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0254) R2 : 0.6
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.35 (0.0659) R2dC : 0.374 R2C : 0.256
β3 : -1.98 (0.105) R2dE : 0.349 R2E : 0.164
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.446 (0.0553) R2dN8 : 0.0805 R2N8 : -0.0315
σ : 0.471
deviance : 102.39
__
_____
C
peak time of C : 7.08
E
wheather : temperature
threshold : 30.5
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.61 0.442 11.3 0.72 1.3 -1.65 0.859 -0.142 -0.298 7.53 30.75 12 -- --
88.63 0.438 11.3 0.702 1.3 -1.65 0.869 -- -0.304 7.55 30.8 14 -- --
90.52 0.443 11.3 0.747 1.3 -1.69 -- -0.272 -0.306 7.38 30.63 12 -- --
90.61 0.443 11.3 0.717 1.31 -1.7 -- -- -0.32 7.4 30.75 14 -- --
177.57 0.624 11.4 0.806 -- -1.49 -- -0.268 -0.282 -- 28.5 7 -- --
123.15 0.52 11.3 1.06 1.29 -- 1.1 -- -0.00535 9.17 -- -- -- --
127.31 0.528 11.3 1.1 1.29 -- -- -- -0.0055 9.04 -- -- -- --
177.68 0.624 11.4 0.76 -- -1.49 -- -- -0.295 -- 28.46 7 -- --
102.39 0.471 11.4 -- 1.35 -1.98 -- -- -0.446 7.08 30.5 18 -- --
223.35 0.698 11.3 1.1 -- -- -- -- 0.00223 -- -- -- -- --
159.16 0.59 11.3 -- 1.29 -- -- -- -0.128 8.98 -- -- -- --
191.67 0.645 11.4 -- -- -1.71 -- -- -0.425 -- 28.21 4 -- --
255.09 0.745 11.3 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.73 temperature 30 10 < th dose dependent rect. 7 23
3 85.55 temperature 10 270 > th dose dependent rect. 13 22
4 85.61 temperature 10 720 > th dose dependent rect. 19 16
5 85.82 temperature 15 10 > th dose dependent rect. 6 16
9 86.83 temperature 15 270 > th dose dependent rect. 3 19
18 87.37 wind 1 43200 > th dose dependent rect. 20 1
19 87.48 wind 9 43200 < th dose dependent rect. 20 1
21 87.50 wind 9 43200 > th dose dependent rect. 18 3
22 87.51 temperature 30 10 < th dose dependent rect. 22 22
32 87.72 temperature 15 720 > th dose dependent rect. 19 22
35 87.79 temperature 30 10 < th dose dependent rect. 9 23
41 88.01 humidity 80 43200 > th dose independent rect. 21 1
46 88.09 humidity 80 43200 < th dose independent rect. 21 1
59 88.31 wind 9 43200 < th dose independent rect. 18 3
62 88.40 humidity 80 43200 < th dose dependent rect. 20 2
73 88.60 temperature 20 720 > th dose dependent sin 9 NA
80 88.67 temperature 10 720 > th dose dependent sin 9 NA
83 88.68 temperature 10 720 > th dose dependent rect. 8 23
84 88.68 temperature 30 10 < th dose dependent rect. 11 23
86 88.70 wind 9 43200 > th dose independent rect. 18 3
93 88.78 wind 5 43200 > th dose independent rect. 14 8
102 88.85 temperature 30 10 < th dose dependent no NA NA
104 88.90 temperature 20 1440 > th dose dependent rect. 15 16
112 88.96 temperature 10 720 > th dose dependent rect. 10 23
126 89.05 temperature 30 720 < th dose dependent rect. 20 18
138 89.12 radiation 40 43200 > th dose dependent rect. 11 1
145 89.14 temperature 30 10 < th dose dependent rect. 9 21
152 89.19 wind 5 43200 > th dose dependent rect. 14 2
157 89.20 temperature 30 10 < th dose dependent rect. 13 23
171 89.26 wind 5 43200 < th dose independent rect. 14 8
179 89.30 temperature 15 720 > th dose dependent rect. 23 23
182 89.32 temperature 30 10 < th dose dependent rect. 17 23
183 89.33 temperature 20 1440 > th dose dependent sin 14 NA
185 89.34 wind 3 43200 > th dose independent rect. 20 1
190 89.37 temperature 20 1440 > th dose dependent rect. 17 5
206 89.44 temperature 15 720 > th dose dependent no NA NA
228 89.53 wind 5 43200 > th dose independent rect. 11 10
230 89.54 temperature 15 10 > th dose dependent no NA NA
236 89.56 wind 9 43200 > th dose dependent rect. 20 1
244 89.58 temperature 30 10 < th dose dependent rect. 15 23
251 89.60 temperature 15 10 > th dose dependent rect. 3 23
252 89.61 wind 5 43200 > th dose independent rect. 15 1
263 89.67 radiation 40 43200 > th dose independent rect. 9 2
277 89.70 temperature 15 10 > th dose dependent rect. 23 23
278 89.71 wind 5 43200 > th dose dependent rect. 14 7
281 89.73 wind 5 43200 < th dose independent rect. 11 11
297 89.75 temperature 10 720 > th dose dependent rect. 4 23
300 89.77 wind 9 43200 < th dose independent rect. 20 1
304 89.78 radiation 20 43200 > th dose independent rect. 6 3
328 89.81 radiation 20 43200 < th dose independent rect. 8 1
333 89.82 radiation 40 43200 < th dose independent rect. 9 1
344 89.85 temperature 30 720 < th dose dependent sin 8 NA
348 89.86 wind 9 43200 > th dose independent rect. 20 1
354 89.87 temperature 25 1440 > th dose dependent rect. 15 4
427 90.02 wind 5 43200 < th dose independent rect. 15 1
436 90.03 wind 3 43200 > th dose dependent rect. 11 11
439 90.04 wind 5 43200 > th dose independent rect. 11 6
441 90.05 humidity 80 43200 < th dose independent rect. 20 3
444 90.05 temperature 30 720 < th dose dependent rect. 22 21
492 90.15 wind 5 43200 > th dose independent sin 19 NA
494 90.15 wind 3 43200 > th dose dependent rect. 13 10
497 90.16 wind 3 43200 < th dose independent rect. 20 2
498 90.17 wind 5 43200 < th dose independent sin 19 NA
523 90.22 wind 5 43200 < th dose independent rect. 11 6
550 90.25 radiation 40 43200 > th dose independent rect. 7 4
598 90.33 radiation 20 43200 < th dose independent rect. 18 16
619 90.34 radiation 20 43200 < th dose independent rect. 22 12
668 90.41 temperature 15 720 > th dose dependent rect. 23 19
739 90.56 temperature 25 1440 > th dose independent rect. 19 3
756 90.58 temperature 20 10 > th dose dependent rect. 15 23
764 90.60 wind 3 43200 > th dose dependent sin 20 NA
799 90.66 radiation 10 43200 > th dose dependent rect. 6 4
877 90.70 humidity 80 43200 < th dose dependent rect. 20 13
950 90.78 radiation 1 43200 < th dose dependent rect. 20 7
989 90.84 atmosphere 995 43200 < th dose independent rect. 15 1