Os04g0662400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Auxin responsive SAUR protein family protein.
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Os04g0662400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Auxin responsive SAUR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.82 | 0.757 | 3.57 | 0.254 | 0.315 | -5.89 | -1.39 | 43.8 | -0.412 | 3.89 | 999.4 | 83 | -- | -- |
| 261.78 | 0.759 | 3.77 | -0.886 | 0.308 | 1.52 | -1.43 | -- | -0.415 | 3.92 | 999.4 | 83 | -- | -- |
| 265.09 | 0.758 | 3.57 | 0.23 | 0.309 | -5.94 | -- | 44.4 | -0.403 | 3.12 | 999.1 | 78 | -- | -- |
| 267.5 | 0.767 | 3.76 | -0.87 | 0.3 | 1.51 | -- | -- | -0.406 | 3.11 | 999.5 | 60 | -- | -- |
| 270.5 | 0.766 | 3.57 | 0.243 | -- | -6.02 | -- | 44.9 | -0.396 | -- | 999.1 | 77 | -- | -- |
| 278.91 | 0.783 | 3.78 | -0.782 | 0.3 | -- | -1.46 | -- | -0.455 | 3.94 | -- | -- | -- | -- |
| 284.84 | 0.79 | 3.77 | -0.763 | 0.293 | -- | -- | -- | -0.447 | 3.07 | -- | -- | -- | -- |
| 272.55 | 0.769 | 3.76 | -0.856 | -- | 1.49 | -- | -- | -0.398 | -- | 999.5 | 38 | -- | -- |
| 286.98 | 0.789 | 3.75 | -- | 0.285 | 1.39 | -- | -- | -0.323 | 2.74 | 999.2 | 40 | -- | -- |
| 289.74 | 0.795 | 3.77 | -0.751 | -- | -- | -- | -- | -0.439 | -- | -- | -- | -- | -- |
| 300.21 | 0.81 | 3.75 | -- | 0.278 | -- | -- | -- | -0.362 | 3.06 | -- | -- | -- | -- |
| 291.53 | 0.795 | 3.74 | -- | -- | 1.34 | -- | -- | -0.312 | -- | 999.2 | 38 | -- | -- |
| 304.62 | 0.815 | 3.75 | -- | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.94 | wind | 3.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 6 | 253.17 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 7 | 253.43 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 23 |
| 9 | 253.67 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 10 | 253.75 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 13 | 253.94 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 20 | 23 |
| 16 | 254.02 | wind | 3.0 | 90 | > th | dose dependent | rect. | 19 | 1 |
| 40 | 254.98 | atmosphere | 1000.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 43 | 255.18 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 48 | 255.28 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 23 | 20 |
| 59 | 255.53 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 76 | 255.87 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 77 | 255.88 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 2 |
| 87 | 256.04 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 90 | 256.06 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 112 | 256.31 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 115 | 256.36 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 6 | 9 |
| 120 | 256.41 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 150 | 256.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 11 |
| 176 | 257.16 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 182 | 257.23 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 3 | 10 |
| 205 | 257.50 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 4 | 11 |
| 206 | 257.51 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 4 | 7 |
| 230 | 257.71 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 7 | 3 |
| 235 | 257.79 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 250 | 257.89 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 257 | 257.98 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 5 | 6 |
| 263 | 258.01 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 4 |
| 264 | 258.03 | atmosphere | 1000.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 271 | 258.05 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 273 | 258.06 | wind | 1.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 276 | 258.06 | wind | 1.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 281 | 258.11 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 282 | 258.11 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 1 | 12 |
| 287 | 258.13 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 13 | 22 |
| 290 | 258.16 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 305 | 258.26 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 21 | 18 |
| 323 | 258.35 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 9 | 11 |
| 347 | 258.51 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 375 | 258.66 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 13 | 8 |
| 406 | 258.87 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 13 |
| 407 | 258.88 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 478 | 259.33 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 20 | 15 |
| 497 | 259.42 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 18 | 22 |
| 519 | 259.51 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 4 | 11 |
| 545 | 259.63 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 5 | NA |
| 553 | 259.67 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 5 | NA |
| 576 | 259.79 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 23 | 9 |
| 632 | 260.07 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 1 |
| 668 | 260.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 753 | 260.60 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 9 | 5 |
| 762 | 260.65 | atmosphere | 1000.0 | 90 | < th | dose dependent | no | NA | NA |
| 778 | 260.72 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 15 |
| 788 | 260.75 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 794 | 260.77 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 9 | 2 |
| 828 | 260.85 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 843 | 260.92 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 23 |
| 868 | 261.02 | atmosphere | 1000.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 876 | 261.06 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 19 | 4 |
| 889 | 261.15 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 11 | 8 |
| 904 | 261.21 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 8 | 11 |
| 932 | 261.33 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 937 | 261.36 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 940 | 261.37 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 19 | 1 |
| 943 | 261.37 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 947 | 261.39 | temperature | 10.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 949 | 261.39 | temperature | 30.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 950 | 261.39 | humidity | 50.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 952 | 261.39 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 953 | 261.39 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 955 | 261.39 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 960 | 261.39 | temperature | 10.0 | 10 | > th | dose independent | rect. | 20 | 23 |
| 961 | 261.39 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 968 | 261.40 | temperature | 30.0 | 4320 | < th | dose independent | sin | 6 | NA |
| 990 | 261.47 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 19 | 1 |