BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0662400 Os04g0662400|AK108652
         (153 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0662400  Auxin responsive SAUR protein family protein        210   3e-55
Os04g0662200  Auxin responsive SAUR protein family protein         91   5e-19
Os04g0517900  Auxin responsive SAUR protein family protein         70   8e-13

>Os04g0662400 Auxin responsive SAUR protein family protein
          Length = 153

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 112/153 (73%)

Query: 1   MCKVITIQXXXXXXXXXXXXXXXXXXXPAGSKMERDGDXXXXXXXXXXXXXXXEDARRFV 60
           MCKVITIQ                   PAGSKMERDGD               EDARRFV
Sbjct: 1   MCKVITIQSLVWLRRTVRRWRSRAAARPAGSKMERDGDAVPAGHVAVRVGGGGEDARRFV 60

Query: 61  VRVAHLNHPAFRELLRQAEEEYGFPSGASGPVALPCDEDHFRDVLRRVSSDERHDLAFCR 120
           VRVAHLNHPAFRELLRQAEEEYGFPSGASGPVALPCDEDHFRDVLRRVSSDERHDLAFCR
Sbjct: 61  VRVAHLNHPAFRELLRQAEEEYGFPSGASGPVALPCDEDHFRDVLRRVSSDERHDLAFCR 120

Query: 121 PAATCGVTKRRAEXXXXXXXRAPLLQGMDSLVW 153
           PAATCGVTKRRAE       RAPLLQGMDSLVW
Sbjct: 121 PAATCGVTKRRAESSSSSSSRAPLLQGMDSLVW 153



>Os04g0662200 Auxin responsive SAUR protein family protein
          Length = 143

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 47/56 (83%), Gaps = 1/56 (1%)

Query: 56  ARRFVVRVAHLNHPAFRELLRQAEEEYGFPSGA-SGPVALPCDEDHFRDVLRRVSS 110
           +RRFVVR AHLNHP FRELLRQAEEEYGFPSGA  GP+ALPCDE  F  VLR +SS
Sbjct: 46  SRRFVVRAAHLNHPVFRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHLSS 101



>Os04g0517900 Auxin responsive SAUR protein family protein
          Length = 129

 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 54  EDARRFVVRVAHLNHPAFRELLRQAEEEYGFPSGASGPVALPCDEDHFRDVLRRVSSDER 113
           E+ RR+VVRV+ L+HP FRELL +A EEY F +GA   + +PCDED F  VL  V S + 
Sbjct: 61  EELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADARLCIPCDEDIFLGVLCHVDSKQE 120

Query: 114 HD--LAFCR 120
           H   ++FCR
Sbjct: 121 HWRLISFCR 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,020,696
Number of extensions: 151103
Number of successful extensions: 321
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)