Os04g0517900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Auxin responsive SAUR protein family protein.
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Os04g0517900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Auxin responsive SAUR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.48 | 0.691 | 2.96 | 0.0376 | 0.129 | 7 | -0.514 | 21.1 | -0.0499 | 3.35 | 9.601 | 19 | -- | -- |
| 222.54 | 0.695 | 2.96 | -0.0481 | 0.0406 | 2.04 | -0.223 | -- | 0.0344 | 22.1 | 9.801 | 18 | -- | -- |
| 217.2 | 0.686 | 2.96 | 0.0459 | 0.125 | 7.05 | -- | 21.6 | -0.0486 | 3.8 | 9.774 | 18 | -- | -- |
| 220.9 | 0.692 | 2.92 | -0.105 | 0.0185 | 1.72 | -- | -- | -0.0434 | 22.2 | 9.613 | 22 | -- | -- |
| 218.05 | 0.688 | 2.96 | 0.0543 | -- | 7.11 | -- | 22.1 | -0.0475 | -- | 9.787 | 18 | -- | -- |
| 228.6 | 0.709 | 2.93 | -0.169 | 0.081 | -- | -0.35 | -- | -0.0724 | 3.05 | -- | -- | -- | -- |
| 228.98 | 0.709 | 2.93 | -0.162 | 0.0837 | -- | -- | -- | -0.0705 | 3.93 | -- | -- | -- | -- |
| 220.42 | 0.691 | 2.92 | -0.102 | -- | 1.92 | -- | -- | -0.0409 | -- | 9.6 | 18 | -- | -- |
| 220.28 | 0.691 | 2.92 | -- | 0.113 | 1.86 | -- | -- | -0.0441 | 4.1 | 9.6 | 22 | -- | -- |
| 229.37 | 0.708 | 2.93 | -0.158 | -- | -- | -- | -- | -0.0682 | -- | -- | -- | -- | -- |
| 229.67 | 0.709 | 2.92 | -- | 0.0806 | -- | -- | -- | -0.0524 | 3.96 | -- | -- | -- | -- |
| 220.65 | 0.692 | 2.92 | -- | -- | 1.95 | -- | -- | -0.0356 | -- | 9.6 | 18 | -- | -- |
| 230.03 | 0.708 | 2.92 | -- | -- | -- | -- | -- | -0.0507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 206.32 | humidity | 90 | 90 | > th | dose dependent | rect. | 20 | 3 |
| 2 | 207.37 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 1 |
| 12 | 207.37 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 23 | 208.45 | humidity | 90 | 90 | > th | dose dependent | rect. | 20 | 1 |
| 33 | 210.06 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 65 | 210.59 | humidity | 90 | 90 | > th | dose independent | rect. | 20 | 3 |
| 87 | 212.65 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 1 |
| 89 | 212.89 | wind | 9 | 30 | > th | dose dependent | sin | 6 | NA |
| 121 | 213.71 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 150 | 214.37 | humidity | 90 | 10 | > th | dose independent | rect. | 22 | 1 |
| 223 | 215.13 | wind | 9 | 30 | < th | dose independent | sin | 4 | NA |
| 246 | 215.48 | wind | 9 | 30 | > th | dose independent | sin | 5 | NA |
| 264 | 215.81 | humidity | 90 | 30 | > th | dose dependent | sin | 18 | NA |
| 283 | 216.02 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 19 |
| 297 | 216.20 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 1 |
| 425 | 217.31 | radiation | 1 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 476 | 217.95 | humidity | 90 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 477 | 217.97 | humidity | 90 | 90 | > th | dose independent | rect. | 20 | 10 |
| 486 | 218.04 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 552 | 218.62 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 20 | 1 |
| 555 | 218.66 | humidity | 80 | 90 | > th | dose dependent | rect. | 20 | 10 |
| 556 | 218.68 | humidity | 90 | 90 | < th | dose independent | rect. | 13 | 18 |
| 564 | 218.78 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 7 |
| 570 | 218.86 | wind | 1 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 610 | 219.08 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 675 | 219.28 | humidity | 90 | 90 | < th | dose independent | rect. | 13 | 14 |
| 688 | 219.34 | humidity | 90 | 90 | > th | dose independent | sin | 14 | NA |
| 755 | 219.78 | wind | 9 | 30 | > th | dose dependent | rect. | 10 | 8 |
| 863 | 220.01 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 21 |