BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0517900 Os04g0517900|J065141A04
         (129 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0517900  Auxin responsive SAUR protein family protein        239   6e-64
Os04g0662400  Auxin responsive SAUR protein family protein         78   2e-15
Os04g0662200  Auxin responsive SAUR protein family protein         67   2e-12
Os09g0437400  Auxin responsive SAUR protein family protein         62   9e-11

>Os04g0517900 Auxin responsive SAUR protein family protein
          Length = 129

 Score =  239 bits (609), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/129 (92%), Positives = 119/129 (92%)

Query: 1   MKGGGSKRRLLRAFLHSWKKLGXXXXXXXXXXGEWAPLDGDGEGAIPSDVPRGHTVVYVG 60
           MKGGGSKRRLLRAFLHSWKKLG          GEWAPLDGDGEGAIPSDVPRGHTVVYVG
Sbjct: 1   MKGGGSKRRLLRAFLHSWKKLGAAAAAAAPAAGEWAPLDGDGEGAIPSDVPRGHTVVYVG 60

Query: 61  EELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADARLCIPCDEDIFLGVLCHVDSKQE 120
           EELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADARLCIPCDEDIFLGVLCHVDSKQE
Sbjct: 61  EELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADARLCIPCDEDIFLGVLCHVDSKQE 120

Query: 121 HWRLISFCR 129
           HWRLISFCR
Sbjct: 121 HWRLISFCR 129



>Os04g0662400 Auxin responsive SAUR protein family protein
          Length = 153

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 50  VPRGHTVVYVG---EELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADARLCIPCDED 106
           VP GH  V VG   E+ RR+VVRV+ L+HP FRELL +A EEY F +GA   + +PCDED
Sbjct: 40  VPAGHVAVRVGGGGEDARRFVVRVAHLNHPAFRELLRQAEEEYGFPSGASGPVALPCDED 99

Query: 107 IFLGVLCHVDSKQEHWRLISFCR 129
            F  VL  V S + H   ++FCR
Sbjct: 100 HFRDVLRRVSSDERH--DLAFCR 120



>Os04g0662200 Auxin responsive SAUR protein family protein
          Length = 143

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 53  GHTVVYVGEELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADA-RLCIPCDEDIFLGV 111
           GH  V VG   RR+VVR + L+HP+FRELL +A EEY F +GA    + +PCDE +F  V
Sbjct: 36  GHVAVCVGGASRRFVVRAAHLNHPVFRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHV 95

Query: 112 LCHVDSKQEHWRLISF 127
           L H+ S     R ++ 
Sbjct: 96  LRHLSSPSSAARFVTL 111



>Os09g0437400 Auxin responsive SAUR protein family protein
          Length = 190

 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 47  PSDVPRGHTVVYVGEELRRYVVRVSSLDHPLFRELLDRAREEYQFAAGADARLCIPCDED 106
           P+DVPRG+  VYVG E RR+V+    L HP+FR LL++A EE+ F       L IPC+ +
Sbjct: 97  PADVPRGYCPVYVGPEQRRFVIPTRYLGHPVFRLLLEKAEEEFGFC--HQGALAIPCETE 154

Query: 107 IFLGVL 112
            F  +L
Sbjct: 155 AFKYIL 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,919,558
Number of extensions: 197950
Number of successful extensions: 489
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 6
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)