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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0662200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin responsive SAUR protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0333) R2 : 0.00137
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0555 (0.0701) R2dN8 : 0.00177 R2N8 : 0.00137
σ : 0.627
deviance : 180.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.41 0.557 3.13 -0.276 0.326 0.866 -0.437 -4.9 0.0577 6.01 18.3 245 23.9 5.13
147.09 0.565 3.14 -0.278 0.34 2.39 -0.852 -- 0.0677 5.69 18.31 221 23.9 5.12
140.53 0.552 3.14 -0.3 0.328 0.976 -- -5 0.0642 6.28 18.21 245 24 4.81
148.75 0.568 3.15 -0.315 0.323 2.53 -- -- 0.051 6.21 18.3 220 23.9 5.12
145.54 0.562 3.14 -0.277 -- 1.06 -- -5.16 0.0564 -- 18.2 244 24 4.75
161.98 0.597 3.16 -0.448 0.418 -- -1.38 -- -0.00914 5.56 -- -- -- --
166.62 0.604 3.16 -0.452 0.412 -- -- -- -0.00287 5.85 -- -- -- --
153.77 0.578 3.15 -0.285 -- 2.72 -- -- 0.0576 -- 18.32 220 23.9 5.13
151.01 0.572 3.14 -- 0.307 2.63 -- -- 0.0886 6.3 18.33 221 23.9 5.18
175.42 0.619 3.17 -0.44 -- -- -- -- 0.00673 -- -- -- -- --
172.01 0.614 3.15 -- 0.405 -- -- -- 0.0475 5.9 -- -- -- --
155.7 0.581 3.14 -- -- 2.83 -- -- 0.0958 -- 18.33 220 23.9 5.15
180.52 0.627 3.15 -- -- -- -- -- 0.0555 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.46 temperature 20.0 270 < th dose dependent rect. 24 5
3 152.32 radiation 1.0 270 > th dose independent rect. 4 1
13 152.32 radiation 1.0 270 > th dose dependent rect. 4 1
33 153.50 humidity 80.0 10 < th dose independent rect. 3 3
44 153.50 humidity 80.0 90 < th dose dependent rect. 3 3
45 153.50 humidity 80.0 10 < th dose dependent rect. 2 5
53 153.51 humidity 80.0 10 < th dose dependent rect. 4 2
89 154.12 temperature 25.0 10 < th dose independent rect. 2 7
94 154.30 humidity 80.0 1440 > th dose independent rect. 5 1
102 154.56 temperature 20.0 30 > th dose dependent rect. 3 4
104 154.58 temperature 20.0 10 > th dose independent rect. 4 3
105 154.58 humidity 80.0 90 > th dose dependent rect. 2 1
129 154.73 temperature 20.0 270 > th dose dependent rect. 3 1
132 154.79 temperature 20.0 270 < th dose independent rect. 3 1
135 154.92 humidity 90.0 30 > th dose independent rect. 13 1
145 154.92 humidity 90.0 30 > th dose dependent rect. 13 1
164 154.93 temperature 20.0 270 < th dose independent rect. 24 6
182 155.12 wind 1.0 90 < th dose dependent rect. 12 1
229 155.48 radiation 10.0 90 > th dose dependent rect. 7 1
233 155.59 wind 3.0 90 < th dose independent rect. 2 1
234 155.59 radiation 20.0 30 > th dose independent rect. 16 16
237 155.64 radiation 20.0 30 > th dose independent rect. 7 1
256 155.66 temperature 20.0 10 < th dose independent rect. 2 4
261 155.72 humidity 90.0 90 > th dose independent rect. 2 1
300 155.90 temperature 30.0 90 < th dose dependent rect. 2 1
301 155.90 radiation 20.0 30 > th dose dependent rect. 16 17
320 155.95 temperature 25.0 10 < th dose dependent rect. 2 7
324 155.97 humidity 90.0 10 > th dose independent rect. 2 2
340 155.99 wind 1.0 90 < th dose independent rect. 12 1
385 156.08 wind 1.0 90 > th dose independent rect. 2 1
441 156.19 radiation 10.0 10 < th dose independent rect. 4 3
444 156.20 wind 7.0 90 < th dose dependent rect. 2 1
515 156.38 atmosphere 1005.0 10 > th dose dependent rect. 5 1
521 156.44 temperature 20.0 270 > th dose independent rect. 3 2
524 156.44 humidity 80.0 10 < th dose dependent rect. 23 10
545 156.46 humidity 80.0 10 > th dose dependent rect. 2 2
566 156.52 temperature 15.0 10 > th dose independent rect. 4 22
570 156.53 wind 9.0 30 < th dose independent rect. 21 23
577 156.55 humidity 80.0 10 < th dose dependent rect. 7 2
596 156.60 temperature 10.0 1440 > th dose independent rect. 21 1
599 156.60 temperature 30.0 1440 < th dose independent rect. 21 1
603 156.60 humidity 50.0 1440 > th dose independent rect. 21 1
609 156.60 atmosphere 995.0 1440 > th dose independent rect. 21 1
610 156.60 radiation 1.0 1440 < th dose independent rect. 21 1
631 156.60 temperature 10.0 1440 > th dose independent rect. 22 23
636 156.62 radiation 30.0 1440 < th dose dependent rect. 21 1
641 156.64 temperature 25.0 30 > th dose independent rect. 20 1
642 156.64 humidity 90.0 270 < th dose independent rect. 2 6
663 156.67 wind 9.0 1440 < th dose independent rect. 21 1
666 156.68 temperature 20.0 30 > th dose dependent rect. 2 1
682 156.71 wind 7.0 1440 < th dose independent rect. 5 1
684 156.71 temperature 10.0 1440 > th dose independent rect. 5 1
687 156.71 temperature 30.0 1440 < th dose independent rect. 5 1
691 156.71 humidity 50.0 1440 > th dose independent rect. 5 1
700 156.71 atmosphere 995.0 1440 > th dose independent rect. 5 1
701 156.71 atmosphere 1015.0 1440 < th dose independent rect. 5 1
702 156.71 radiation 20.0 1440 < th dose independent rect. 5 1
713 156.71 temperature 10.0 1440 > th dose independent rect. 6 23
717 156.72 humidity 80.0 10 < th dose dependent rect. 20 13
718 156.73 precipitation 0.1 90 < th dose independent rect. 2 1
721 156.73 precipitation 0.1 90 < th dose dependent rect. 2 1
723 156.74 temperature 10.0 90 > th dose independent rect. 2 1
725 156.74 temperature 30.0 90 < th dose independent rect. 2 1
726 156.74 humidity 50.0 90 > th dose independent rect. 2 1
729 156.74 atmosphere 995.0 90 > th dose independent rect. 2 1
730 156.74 atmosphere 1010.0 90 < th dose independent rect. 2 1
732 156.74 radiation 1.0 90 < th dose independent rect. 2 1
738 156.74 temperature 20.0 30 > th dose dependent rect. 20 1
741 156.74 radiation 1.0 90 < th dose dependent rect. 2 1
747 156.75 atmosphere 1005.0 30 > th dose dependent rect. 20 1
748 156.77 temperature 20.0 720 < th dose dependent rect. 16 1
752 156.78 atmosphere 1000.0 90 > th dose independent rect. 3 23
755 156.79 wind 3.0 30 > th dose independent rect. 20 1
759 156.80 humidity 90.0 30 < th dose independent rect. 20 1
760 156.80 wind 5.0 10 < th dose independent rect. 2 2
768 156.81 atmosphere 1000.0 30 > th dose dependent rect. 2 1
776 156.82 radiation 40.0 14400 < th dose dependent rect. 21 1
778 156.83 humidity 80.0 30 > th dose independent rect. 20 1
795 156.86 atmosphere 1015.0 90 < th dose dependent rect. 2 1
826 156.89 wind 5.0 30 < th dose independent rect. 20 1
828 156.89 atmosphere 1005.0 30 > th dose independent rect. 20 1
830 156.89 wind 1.0 30 > th dose dependent rect. 20 1
843 156.92 temperature 10.0 30 > th dose independent rect. 20 1
845 156.92 temperature 30.0 30 < th dose independent rect. 20 1
846 156.92 humidity 50.0 30 > th dose independent rect. 20 1
850 156.92 atmosphere 1010.0 30 < th dose independent rect. 20 1
852 156.92 radiation 1.0 30 < th dose independent rect. 20 1
857 156.92 precipitation 0.1 30 < th dose independent rect. 20 1
861 156.92 temperature 10.0 30 > th dose independent rect. 21 23
862 156.92 radiation 1.0 30 < th dose dependent rect. 20 1
867 156.92 precipitation 0.1 30 < th dose dependent rect. 20 1
887 156.94 humidity 50.0 30 > th dose dependent rect. 20 1
920 156.96 humidity 70.0 90 < th dose independent rect. 19 13
929 156.96 humidity 70.0 90 < th dose dependent rect. 19 13
949 156.97 wind 9.0 30 < th dose dependent rect. 20 1
980 156.99 precipitation 0.1 90 < th dose independent rect. 3 23
984 156.99 precipitation 0.1 90 < th dose dependent rect. 3 23
985 157.00 humidity 80.0 1440 > th dose independent rect. 2 1