BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0662200 Os04g0662200|AK107934
         (143 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0662200  Auxin responsive SAUR protein family protein        204   2e-53
Os04g0662400  Auxin responsive SAUR protein family protein         91   4e-19
Os09g0507900  Auxin responsive SAUR protein family protein         64   3e-11

>Os04g0662200 Auxin responsive SAUR protein family protein
          Length = 143

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/143 (73%), Positives = 105/143 (73%)

Query: 1   MAKCSKIRYIVWLRQTLXXXXXXXXXXXXXXXXXXXXXXXCVGGASRRFVVRAAHLNHPV 60
           MAKCSKIRYIVWLRQTL                       CVGGASRRFVVRAAHLNHPV
Sbjct: 1   MAKCSKIRYIVWLRQTLRRWRSRAAARAAAEAVPAGHVAVCVGGASRRFVVRAAHLNHPV 60

Query: 61  FRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHLSSPSSAARFVTLEDIQXXXXX 120
           FRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHLSSPSSAARFVTLEDIQ     
Sbjct: 61  FRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHLSSPSSAARFVTLEDIQSGALS 120

Query: 121 XXXXXXXXXXPLLRGIATDKAVW 143
                     PLLRGIATDKAVW
Sbjct: 121 CCCAAAGDALPLLRGIATDKAVW 143



>Os04g0662400 Auxin responsive SAUR protein family protein
          Length = 153

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 43  GGASRRFVVRAAHLNHPVFRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHLSS 101
           G  +RRFVVR AHLNHP FRELLRQAEEEYGFPSGA  GP+ALPCDE  F  VLR +SS
Sbjct: 53  GEDARRFVVRVAHLNHPAFRELLRQAEEEYGFPSGA-SGPVALPCDEDHFRDVLRRVSS 110



>Os09g0507900 Auxin responsive SAUR protein family protein
          Length = 665

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 3/58 (5%)

Query: 42 VGGASRRFVVRAAHLNHPVFRELLRQAEEEYGFPSGAYCGPIALPCDEGLFEHVLRHL 99
          VG A +RFVVR A +NHP+FR LL +AEE +G+   A  GP+ LPCD  +F  VL  +
Sbjct: 41 VGAARQRFVVRTASVNHPLFRPLLEEAEEAFGY---AAAGPLQLPCDAAVFARVLEQI 95



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,654,910
Number of extensions: 118998
Number of successful extensions: 322
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 3
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)