BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0506100 Os10g0506100|AK120420
         (135 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0506100  Heavy metal transport/detoxification protein d...   176   5e-45
Os03g0111400  Heavy metal transport/detoxification protein d...   102   6e-23
Os04g0533900  Heavy metal transport/detoxification protein d...    83   6e-17

>Os10g0506100 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 135

 Score =  176 bits (446), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 89/102 (87%)

Query: 1   MAQVSKCNSCLWFNSLIPSAVHAFVSSDDNSQQKVVLRVPTMTDDKIKQKAIEAVADIYG 60
           MAQVSKCNSCLWFNSLIPSAVHAFVSSDDNSQQKVVLRVPTMTDDKIKQKAIEAVADIYG
Sbjct: 1   MAQVSKCNSCLWFNSLIPSAVHAFVSSDDNSQQKVVLRVPTMTDDKIKQKAIEAVADIYG 60

Query: 61  IDSIAADLKDNKMTIIGEMDTVAXXXXXXXXXXXXXVSVGPA 102
           IDSIAADLKDNKMTIIGEMDTVA             VSVGPA
Sbjct: 61  IDSIAADLKDNKMTIIGEMDTVAIAKKLKKIGKIDIVSVGPA 102



>Os03g0111400 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 120

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 63/86 (73%)

Query: 17  IPSAVHAFVSSDDNSQQKVVLRVPTMTDDKIKQKAIEAVADIYGIDSIAADLKDNKMTII 76
           +PSA  + VS+     QKVVL+VPTMTD+K KQKAIEAVADIYGIDSIAADLKDNKMTII
Sbjct: 3   LPSADISTVSTLLQMAQKVVLKVPTMTDEKTKQKAIEAVADIYGIDSIAADLKDNKMTII 62

Query: 77  GEMDTVAXXXXXXXXXXXXXVSVGPA 102
           G+MDTV              VSVGPA
Sbjct: 63  GDMDTVEIAKKLRKIGKIDIVSVGPA 88



>Os04g0533900 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 83

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 51/70 (72%)

Query: 33  QKVVLRVPTMTDDKIKQKAIEAVADIYGIDSIAADLKDNKMTIIGEMDTVAXXXXXXXXX 92
           QKV+L+V +M+D K+KQKA+E VADIYGIDSIAAD KD KMT+IGE+DTV          
Sbjct: 1   QKVILKVSSMSDTKMKQKAMETVADIYGIDSIAADHKDQKMTVIGEVDTVEIAKKLKKFG 60

Query: 93  XXXXVSVGPA 102
               +SVGPA
Sbjct: 61  KVDIISVGPA 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,568,336
Number of extensions: 75034
Number of successful extensions: 241
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 3
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)