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Os10g0506100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.53 (0.0375) R2 : 0.737
β1 : -2.97 (0.137) R2dD : 0.279 R2D : 0.179
β2 : 2.26 (0.0978) R2dC : 0.317 R2C : 0.322
β3 : 0.897 (0.0756) R2dE : 0.0846 R2E : 0.0961
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.07 (0.08) R2dN8 : 0.138 R2N8 : 0.022
σ : 0.7
deviance : 225.88
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_____
C
peak time of C : 7.27
E
wheather : radiation
threshold : 10.03
memory length : 85
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
216.1 0.691 7.52 -2.99 2.26 0.887 0.902 1.03 -1.05 7.25 10.04 89 -- --
220.91 0.692 7.53 -2.98 2.24 0.89 1.37 -- -1.05 7.32 10.02 85 -- --
217.93 0.688 7.52 -2.99 2.26 0.883 -- 1.22 -1.04 7.27 10.03 86 -- --
225.88 0.7 7.53 -2.97 2.26 0.897 -- -- -1.07 7.27 10.03 85 -- --
410.51 0.949 7.58 -2.79 -- 1.32 -- 0.91 -0.995 -- 4.62 15 -- --
241.08 0.728 7.5 -2.9 2.54 -- 1.61 -- -0.992 8.64 -- -- -- --
249.53 0.74 7.5 -2.85 2.54 -- -- -- -0.992 8.61 -- -- -- --
415.92 0.954 7.58 -2.77 -- 1.32 -- -- -0.991 -- 4.62 15 -- --
433.66 0.97 7.45 -- 2.13 0.982 -- -- -0.714 7.16 9.33 55 -- --
611.72 1.16 7.57 -2.84 -- -- -- -- -0.97 -- -- -- -- --
463.4 1.01 7.43 -- 2.53 -- -- -- -0.675 8.69 -- -- -- --
617.88 1.16 7.51 -- -- 1.36 -- -- -0.684 -- 4.62 15 -- --
824.59 1.34 7.5 -- -- -- -- -- -0.655 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 211.05 humidity 80 10 > th dose dependent sin 1 NA
5 211.41 humidity 80 10 < th dose independent rect. 20 20
8 211.68 atmosphere 995 43200 > th dose independent rect. 18 3
10 211.73 wind 1 43200 > th dose independent rect. 2 4
15 211.94 atmosphere 1000 270 > th dose independent rect. 14 17
18 212.10 radiation 10 90 > th dose independent sin 2 NA
24 212.33 radiation 20 90 < th dose dependent sin 2 NA
28 212.64 wind 1 43200 < th dose independent rect. 2 5
34 212.90 radiation 10 90 < th dose independent sin 2 NA
41 212.97 radiation 10 90 < th dose dependent rect. 5 14
44 212.99 humidity 80 10 > th dose independent sin 3 NA
48 213.08 atmosphere 995 43200 < th dose independent rect. 17 2
56 213.12 atmosphere 1000 270 > th dose independent rect. 11 21
57 213.12 atmosphere 995 43200 < th dose dependent rect. 18 1
91 213.56 humidity 90 10 < th dose independent rect. 1 14
98 213.71 humidity 80 90 > th dose dependent rect. 24 23
114 214.13 radiation 10 90 > th dose independent rect. 17 22
124 214.26 humidity 80 90 > th dose dependent rect. 1 16
128 214.34 temperature 30 43200 < th dose independent rect. 3 6
133 214.43 radiation 40 14400 > th dose independent rect. 10 1
138 214.48 temperature 30 43200 < th dose independent rect. 6 3
145 214.57 atmosphere 1000 270 > th dose independent rect. 23 9
146 214.58 radiation 10 90 > th dose independent rect. 6 9
167 214.64 wind 1 43200 < th dose dependent rect. 2 3
168 214.65 radiation 40 14400 < th dose independent rect. 10 1
179 214.76 radiation 10 90 < th dose independent rect. 5 14
186 214.83 temperature 30 43200 < th dose independent rect. 19 14
194 214.92 temperature 30 43200 < th dose independent rect. 23 10
239 215.19 temperature 30 43200 > th dose independent rect. 8 1
280 215.44 humidity 80 10 > th dose independent rect. 2 14
307 215.58 humidity 90 10 < th dose independent sin 2 NA
308 215.58 atmosphere 1000 10 > th dose independent rect. 15 17
326 215.66 radiation 10 90 < th dose independent rect. 1 18
343 215.87 humidity 80 10 > th dose independent rect. 24 16
352 215.95 humidity 80 10 > th dose independent rect. 2 12
360 216.05 humidity 80 10 > th dose independent rect. 24 20
361 216.05 humidity 80 10 > th dose independent rect. 24 23
367 216.10 atmosphere 1000 10 > th dose independent rect. 17 15
375 216.17 radiation 10 90 > th dose independent no NA NA
455 216.17 temperature 30 43200 > th dose dependent rect. 8 1
503 216.44 atmosphere 1005 10 < th dose dependent rect. 16 20
513 216.52 atmosphere 1000 90 > th dose independent rect. 1 8
518 216.53 radiation 10 90 < th dose dependent rect. 5 12
536 216.70 radiation 10 90 < th dose independent rect. 21 23
537 216.70 radiation 20 90 < th dose dependent rect. 21 23
539 216.71 radiation 20 90 < th dose dependent rect. 1 18
544 216.74 humidity 80 30 > th dose dependent rect. 5 23
546 216.75 radiation 10 90 < th dose independent rect. 24 23
636 217.23 radiation 20 14400 < th dose independent rect. 8 1
637 217.23 atmosphere 1000 10 > th dose independent rect. 24 10
649 217.30 radiation 20 14400 > th dose independent rect. 8 1
673 217.41 radiation 10 90 > th dose independent rect. 9 23
675 217.42 humidity 70 270 > th dose dependent rect. 22 10
679 217.45 atmosphere 1000 10 > th dose independent rect. 14 20
717 217.65 radiation 10 90 < th dose independent rect. 9 23
721 217.68 radiation 20 90 < th dose dependent rect. 12 23
725 217.70 radiation 20 90 < th dose dependent rect. 9 23
755 217.77 radiation 10 14400 < th dose dependent rect. 12 2
756 217.78 radiation 10 90 < th dose independent no NA NA
770 217.82 radiation 20 90 < th dose dependent no NA NA
787 217.91 humidity 80 30 > th dose dependent rect. 21 23
802 217.96 radiation 10 90 < th dose independent rect. 13 23
807 217.99 humidity 80 30 > th dose dependent rect. 19 23
812 218.03 humidity 80 30 > th dose dependent no NA NA
813 218.03 humidity 80 30 > th dose dependent rect. 11 23
815 218.04 humidity 80 30 > th dose dependent rect. 17 23
823 218.06 humidity 80 30 > th dose dependent rect. 15 23
824 218.07 atmosphere 1000 10 > th dose independent rect. 12 22
826 218.07 humidity 80 30 > th dose dependent rect. 13 23
828 218.09 radiation 10 14400 > th dose independent rect. 13 1
831 218.10 atmosphere 1000 270 > th dose independent rect. 22 22
855 218.16 radiation 10 90 < th dose dependent rect. 5 10
859 218.17 radiation 30 14400 > th dose dependent rect. 10 1
900 218.24 humidity 80 30 > th dose dependent rect. 9 23
971 218.46 temperature 25 10 < th dose independent rect. 2 8
985 218.51 radiation 10 90 < th dose independent rect. 5 12
993 218.54 radiation 20 90 < th dose dependent rect. 24 23