Os04g0533900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heavy metal transport/detoxification protein domain containing protein.
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Os04g0533900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heavy metal transport/detoxification protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.54 | 0.606 | 5.57 | 1.33 | 0.299 | 1.23 | 0.868 | -2.81 | 0.834 | 23 | 29.3 | 1381 | -- | -- |
| 169.84 | 0.607 | 5.63 | 0.595 | 0.235 | 1.01 | 1.1 | -- | 0.776 | 21.3 | 28.03 | 1615 | -- | -- |
| 169.41 | 0.606 | 5.55 | 1.44 | 0.3 | 1.27 | -- | -3.13 | 0.912 | 23.5 | 29.23 | 1366 | -- | -- |
| 172.89 | 0.612 | 5.64 | 0.535 | 0.234 | 0.922 | -- | -- | 0.771 | 0.179 | 28.01 | 1425 | -- | -- |
| 174.54 | 0.615 | 5.54 | 1.32 | -- | 1.2 | -- | -2.71 | 0.921 | -- | 28.8 | 1506 | -- | -- |
| 213.01 | 0.684 | 5.68 | 0.241 | 0.176 | -- | 1.16 | -- | 0.574 | 21 | -- | -- | -- | -- |
| 216.14 | 0.688 | 5.68 | 0.194 | 0.226 | -- | -- | -- | 0.569 | 0.0531 | -- | -- | -- | -- |
| 176.85 | 0.619 | 5.64 | 0.522 | -- | 0.935 | -- | -- | 0.709 | -- | 29.09 | 1476 | -- | -- |
| 179.76 | 0.624 | 5.64 | -- | 0.335 | 0.861 | -- | -- | 0.704 | 0.941 | 28.3 | 1340 | -- | -- |
| 219.36 | 0.692 | 5.67 | 0.201 | -- | -- | -- | -- | 0.572 | -- | -- | -- | -- | -- |
| 217.13 | 0.689 | 5.68 | -- | 0.229 | -- | -- | -- | 0.547 | 0.101 | -- | -- | -- | -- |
| 183.26 | 0.63 | 5.65 | -- | -- | 0.814 | -- | -- | 0.634 | -- | 28.9 | 1476 | -- | -- |
| 220.43 | 0.693 | 5.68 | -- | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.82 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 2 | 166.39 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 4 | 167.31 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 5 | 167.42 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 7 | 167.64 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 11 | 167.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 13 | 167.89 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 18 | 168.03 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 19 | 168.05 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 27 | 168.12 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 30 | 168.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 31 | 168.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 37 | 168.16 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 72 | 168.28 | temperature | 25.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 106 | 168.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 186 | 168.69 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 196 | 168.75 | humidity | 70.0 | 720 | > th | dose independent | sin | 11 | NA |
| 207 | 168.78 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 260 | 169.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 15 |
| 278 | 169.25 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 352 | 169.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 354 | 169.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 17 |
| 359 | 170.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 360 | 170.09 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 380 | 170.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 383 | 170.36 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 400 | 170.46 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 408 | 170.53 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 413 | 170.56 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 424 | 170.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 426 | 170.65 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 428 | 170.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 19 |
| 432 | 170.70 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 438 | 170.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 461 | 170.89 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 486 | 171.03 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 499 | 171.09 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 511 | 171.11 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 20 |
| 517 | 171.12 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 540 | 171.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 560 | 171.26 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 561 | 171.26 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 567 | 171.28 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 576 | 171.31 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 582 | 171.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 583 | 171.33 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 585 | 171.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 599 | 171.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 600 | 171.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 601 | 171.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 602 | 171.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 603 | 171.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 608 | 171.41 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 612 | 171.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 613 | 171.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 616 | 171.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 12 |
| 621 | 171.43 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 637 | 171.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 641 | 171.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 642 | 171.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 647 | 171.48 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 648 | 171.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 650 | 171.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 653 | 171.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 654 | 171.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 668 | 171.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 670 | 171.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 672 | 171.54 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 673 | 171.54 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 679 | 171.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 682 | 171.55 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 695 | 171.57 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 698 | 171.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 701 | 171.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 705 | 171.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 708 | 171.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 17 |
| 710 | 171.58 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 15 | NA |
| 714 | 171.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 716 | 171.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 717 | 171.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 10 |
| 724 | 171.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 727 | 171.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 733 | 171.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 752 | 171.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 17 |
| 762 | 171.67 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 774 | 171.69 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 777 | 171.69 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 783 | 171.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 787 | 171.70 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 788 | 171.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 865 | 171.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 877 | 171.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 884 | 171.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 20 |
| 899 | 171.83 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 913 | 171.85 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 15 |