BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0533900 Os04g0533900|J065198A06
         (83 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23760.1  | chr5:8013242-8014129 REVERSE LENGTH=104             77   3e-15
AT1G01490.1  | chr1:180401-182066 REVERSE LENGTH=178               66   4e-12
AT5G52740.1  | chr5:21382530-21383180 FORWARD LENGTH=119           57   3e-09
AT5G52750.1  | chr5:21384134-21384795 FORWARD LENGTH=140           49   8e-07
AT5G52760.1  | chr5:21386919-21387540 FORWARD LENGTH=127           45   8e-06

>AT5G23760.1 | chr5:8013242-8014129 REVERSE LENGTH=104
          Length = 103

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 59/70 (84%)

Query: 1  QKVILKVSSMSDTKMKQKAMETVADIYGIDSIAADHKDQKMTVIGEVDTVEIAKKLKKFG 60
          QKV+LKV +M+D K KQKA+E  ADI+G+DSIAAD KDQK+TVIG +D V + KKLKK G
Sbjct: 3  QKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMDAVAVVKKLKKVG 62

Query: 61 KVDIISVGPA 70
          KVD+ISVGPA
Sbjct: 63 KVDLISVGPA 72



>AT1G01490.1 | chr1:180401-182066 REVERSE LENGTH=178
          Length = 177

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 53/71 (74%), Gaps = 2/71 (2%)

Query: 1  QKVILKVSSMSDTKMKQKAMETVADIYGIDSIAADHKDQKMTVIGEVDTVEIAKKLKKFG 60
          +K++LK+  + D + KQKA++TV+ + GIDSIA D K++K+TVIG VD V +  KL+K+ 
Sbjct: 2  KKIVLKLD-LHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYW 60

Query: 61 KV-DIISVGPA 70
           + DI+ VGPA
Sbjct: 61 PMTDIVLVGPA 71



>AT5G52740.1 | chr5:21382530-21383180 FORWARD LENGTH=119
          Length = 118

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 3/69 (4%)

Query: 1  QKVILKVSSMSDTKMKQKAMETVADIYGIDSIAADHKDQKMTVIGEVDTVEIAKKLKKFG 60
          Q V+LK+    + K KQKAM TV  + G++S+    KD K+TV GE+D   I KKLKK  
Sbjct: 2  QVVVLKLDVHCE-KTKQKAMSTVCCLSGVNSVEV--KDGKLTVTGEIDAYMIVKKLKKIC 58

Query: 61 KVDIISVGP 69
            + ISVGP
Sbjct: 59 HTEFISVGP 67



>AT5G52750.1 | chr5:21384134-21384795 FORWARD LENGTH=140
          Length = 139

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 2  KVILKVSSMSDTKMKQKAMETVADIYGIDSIAADHKDQKMTVIGEVDTVEIAKKLKKFGK 61
          K +L++S + + ++++KA  TV+   G+ SI  D K  KMTV+GEVD   I  KL+K   
Sbjct: 5  KAVLQLS-IHEERIRKKAFVTVSRCPGVTSITMDDKTGKMTVVGEVDVPVIVMKLRKLCN 63

Query: 62 VDIISV 67
           +++SV
Sbjct: 64 TELVSV 69



>AT5G52760.1 | chr5:21386919-21387540 FORWARD LENGTH=127
          Length = 126

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 9  SMSDTKMKQKAMETVADIYGIDSIAADHKDQKMTVIGEVDTVEIAKKLKKFGKVDIISV 67
          S+ + + ++KA+ TV+   G+ SI  D K  KMT++GEVD   +  KL+K    +I+SV
Sbjct: 11 SIHEERTRKKALVTVSRFSGVTSITMD-KSGKMTIVGEVDVPAVVMKLRKLCNTEIVSV 68



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,193,716
Number of extensions: 34208
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 6
Length of query: 83
Length of database: 11,106,569
Length adjustment: 54
Effective length of query: 29
Effective length of database: 9,626,105
Effective search space: 279157045
Effective search space used: 279157045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)