BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0490100 Os10g0490100|AK102387
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0490100 Virulence factor, pectin lyase fold family pro... 325 2e-89
Os10g0490666 155 2e-38
Os02g0637000 Barwin-related endoglucanase domain containing... 136 1e-32
Os04g0364800 Barwin-related endoglucanase domain containing... 134 4e-32
Os10g0490400 Zinc finger, SWIM-type domain containing protein 106 1e-23
Os10g0489400 101 3e-22
Os10g0490533 89 3e-18
Os10g0489301 88 4e-18
>Os10g0490100 Virulence factor, pectin lyase fold family protein
Length = 213
Score = 325 bits (832), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 173/213 (81%), Positives = 173/213 (81%)
Query: 1 MAGAMTMSRRRLSHXXXXXXXXXXXXXXXXXXXXXXXXXXXFFPHRSLLQSSSCQPSGAI 60
MAGAMTMSRRRLSH FFPHRSLLQSSSCQPSGAI
Sbjct: 1 MAGAMTMSRRRLSHALLLVLAILPNLAALAVAAGGGSGGGGFFPHRSLLQSSSCQPSGAI 60
Query: 61 TGTSGDCNADNGSECCQDGVQYMTYACSPPVXXXXXXXXXXXXXNSFADGGDGGGAPSCT 120
TGTSGDCNADNGSECCQDGVQYMTYACSPPV NSFADGGDGGGAPSCT
Sbjct: 61 TGTSGDCNADNGSECCQDGVQYMTYACSPPVAAGGTGTAALLTLNSFADGGDGGGAPSCT 120
Query: 121 GRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCDSDHNFEP 180
GRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCDSDHNFEP
Sbjct: 121 GRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCDSDHNFEP 180
Query: 181 PCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA 213
PCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA
Sbjct: 181 PCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA 213
>Os10g0490666
Length = 216
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 106/161 (65%), Gaps = 3/161 (1%)
Query: 54 CQPSGAITGTSGDCNADNGSECCQDGVQYMTYACSPPVXXXXXXXXXXXXXNSFADGGDG 113
C SG + G +G CN +GS+CC G +Y + CSPPV NSFA GGDG
Sbjct: 56 CHISGFLHGKAGKCNRAHGSDCCVTGRRYPQFRCSPPVSSARPTPATLTL-NSFARGGDG 114
Query: 114 GGAPSCTGRFYDDGQLVVALSTGWF--DGRSRCEKDVVIRASGGASVTAMVVDECDSQRG 171
GG SC GRF+ D +VVALS+GW DG SRC + + + A G S A VVDECDS G
Sbjct: 115 GGRSSCDGRFHPDTAMVVALSSGWLRLDGASRCNRMIRVAAGNGRSALARVVDECDSVNG 174
Query: 172 CDSDHNFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWSD 212
CD++HNFEPPC N++VDGSPAVW ALGL++ GE ++TWSD
Sbjct: 175 CDAEHNFEPPCPNDVVDGSPAVWKALGLDEGVGEFKVTWSD 215
>Os02g0637000 Barwin-related endoglucanase domain containing protein
Length = 192
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 95/161 (59%), Gaps = 9/161 (5%)
Query: 54 CQPSGAITGTSGDCNADNGSECCQDGVQYMTYACSPPVXXXXXXXXXXXXXNSFADGGDG 113
C PSG + + + + +CC+ G Y TYACSP N F GGDG
Sbjct: 40 CNPSGTLRPS----RSHSCQDCCKAGRSYPTYACSPATTGSTKAVMTL---NDFEAGGDG 92
Query: 114 GGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCD 173
G C G+F+ + + VVALSTGW+ RC K++ I A+G SV A VVDECDS GCD
Sbjct: 93 GDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIRINANG-RSVLAKVVDECDSLHGCD 151
Query: 174 SDHNFEPPCRNNIVDGSPAVWDALGLNKDD-GEAQITWSDA 213
+H ++PPCR N+VD S AVWDAL + +D GE ITWSDA
Sbjct: 152 KEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDITWSDA 192
>Os04g0364800 Barwin-related endoglucanase domain containing protein
Length = 183
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 101/162 (62%), Gaps = 10/162 (6%)
Query: 54 CQPSGAI-TGTSGDCNADNGSECCQDGVQYMTYACSPPVXXXXXXXXXXXXXNSFADGGD 112
C PSGAI + T+ C +CC+ G Y TY CSPP N F GGD
Sbjct: 30 CNPSGAIRSSTTHRCQ-----DCCKAGQSYPTYTCSPPTTGSSTDAVMTL--NDFDAGGD 82
Query: 113 GGGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGC 172
GGG C ++ + +LVVALSTGW+ G SRC K V I A+G SV A VVDECDSQRGC
Sbjct: 83 GGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINANG-RSVLAKVVDECDSQRGC 141
Query: 173 DSDHNFEPPCRNNIVDGSPAVWDALGLNKDD-GEAQITWSDA 213
D +H ++PPCR N+VD S AVWDALG+ +D GE ITWSDA
Sbjct: 142 DEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSDA 183
>Os10g0490400 Zinc finger, SWIM-type domain containing protein
Length = 1009
Score = 106 bits (265), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Query: 142 SRCEKDVVIRASGGA--SVTAMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGL 199
+RC V I ASGG+ SV A VVDECDS GCD +HN+EPPC NNIVD SPAVWDALGL
Sbjct: 2 ARCGHRVRITASGGSGRSVVAKVVDECDSVHGCDGEHNYEPPCDNNIVDASPAVWDALGL 61
Query: 200 NKDDGEAQITWSD 212
+K G ITWSD
Sbjct: 62 DKSVGMEHITWSD 74
>Os10g0489400
Length = 162
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 19/117 (16%)
Query: 105 NSFADGGDGGGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRAS---------GG 155
N F G DGGG +C G ++ DG+L+VALST WF G RC + + I S G
Sbjct: 55 NGFEKGEDGGGPAACDGHYHSDGELIVALSTEWFAGGRRCHRRIRITPSEHGRRGGGGGR 114
Query: 156 ASVTAMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWSD 212
+V A VVDECDS+RG C++++VD SPAVW ALGL+ D GE ++TWSD
Sbjct: 115 RAVEATVVDECDSRRG----------CKDDVVDSSPAVWRALGLDTDSGEVRVTWSD 161
>Os10g0490533
Length = 186
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 107 FADGGDGGGAP-SCTGRFYDDGQLVVALSTGWFDGRSRCEKD--------VVIRASGGAS 157
F G D GG P SC RF+ + +LVVALS+GW + V ASG +S
Sbjct: 63 FDHGEDDGGVPTSCDMRFHRNTELVVALSSGWLRLGGGRRRCHRRIRVFAVAGAASGRSS 122
Query: 158 VTAMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWS 211
V A VVD+CDS GC + F PPCRNN V GSP VW+ LGLN GE ++ WS
Sbjct: 123 VVARVVDDCDSVNGCREEDGFAPPCRNNAVGGSPVVWEKLGLNASVGEFEVVWS 176
>Os10g0489301
Length = 167
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 61/97 (62%), Gaps = 10/97 (10%)
Query: 118 SCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRA-SGGASVTAMVVDECDSQRGCDSDH 176
+C GR++ D LV ALSTGWF G RC + + I + G SV A VVDECDS+ G
Sbjct: 80 ACDGRYHSDRSLVAALSTGWFAGGRRCHRGIRITSRQNGRSVVATVVDECDSRHG----- 134
Query: 177 NFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA 213
C+++IVD S AVW ALGL+ + GE +TWSDA
Sbjct: 135 ----GCKDDIVDTSAAVWSALGLDTNVGEVPVTWSDA 167
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,980,482
Number of extensions: 354643
Number of successful extensions: 1019
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 8
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)