Os04g0364800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Barwin-related endoglucanase domain containing protein.
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Os04g0364800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Barwin-related endoglucanase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.16 | 0.609 | 9.69 | -2.09 | 0.965 | 2.32 | 0.877 | -2.05 | -0.235 | 14.2 | 20.83 | 874 | 2.91 | -- |
| 176.19 | 0.618 | 9.64 | -1.66 | 0.762 | 2.4 | 0.529 | -- | -0.127 | 13.9 | 20.9 | 872 | 2.38 | -- |
| 170.45 | 0.608 | 9.69 | -2.04 | 1.03 | 2.33 | -- | -1.85 | -0.242 | 14.4 | 20.9 | 873 | 3.17 | -- |
| 177.39 | 0.62 | 9.64 | -1.64 | 0.734 | 2.42 | -- | -- | -0.123 | 13.8 | 20.88 | 872 | 2.28 | -- |
| 185.54 | 0.634 | 9.63 | -1.66 | -- | 2.9 | -- | -0.492 | -0.194 | -- | 20.9 | 771 | 0.847 | -- |
| 325.09 | 0.845 | 9.49 | -0.953 | 1.64 | -- | 1.21 | -- | 0.416 | 12.1 | -- | -- | -- | -- |
| 331.38 | 0.852 | 9.49 | -0.906 | 1.64 | -- | -- | -- | 0.421 | 12.1 | -- | -- | -- | -- |
| 183.79 | 0.631 | 9.64 | -1.68 | -- | 2.89 | -- | -- | -0.121 | -- | 20.61 | 768 | 0.626 | -- |
| 239.87 | 0.721 | 9.59 | -- | 1.23 | 1.94 | -- | -- | 0.0981 | 14.3 | 21.21 | 811 | 3.19 | -- |
| 500.8 | 1.05 | 9.52 | -0.958 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 353.01 | 0.879 | 9.47 | -- | 1.65 | -- | -- | -- | 0.522 | 12.1 | -- | -- | -- | -- |
| 251.28 | 0.738 | 9.58 | -- | -- | 2.54 | -- | -- | 0.144 | -- | 20.62 | 672 | 3.71e-07 | -- |
| 525 | 1.07 | 9.5 | -- | -- | -- | -- | -- | 0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 2 | 177.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 4 | 178.83 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 7 | 179.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 11 | 180.16 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 34 | 183.03 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 58 | 184.27 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 61 | 184.39 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 10 |
| 64 | 184.48 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 73 | 184.89 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 92 | 185.78 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 98 | 185.99 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 125 | 187.27 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 136 | 187.46 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 220 | 189.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 343 | 193.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 391 | 194.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 407 | 194.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 435 | 194.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 491 | 195.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 503 | 196.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 770 | 200.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 775 | 200.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 781 | 200.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 789 | 200.36 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 800 | 200.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 808 | 200.53 | radiation | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 847 | 200.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 874 | 201.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 907 | 201.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 930 | 201.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 938 | 201.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 939 | 201.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 940 | 201.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 19 |
| 946 | 201.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 948 | 201.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 967 | 201.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 19 |
| 968 | 201.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 21 |
| 971 | 201.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 982 | 201.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 999 | 201.66 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 1000 | 201.67 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |