BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0364800 Os04g0364800|009-103-H11
(183 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0364800 Barwin-related endoglucanase domain containing... 284 2e-77
Os02g0637000 Barwin-related endoglucanase domain containing... 245 2e-65
Os10g0490100 Virulence factor, pectin lyase fold family pro... 124 5e-29
Os10g0490666 120 8e-28
Os10g0489400 107 4e-24
Os10g0489301 104 4e-23
Os10g0490400 Zinc finger, SWIM-type domain containing protein 100 7e-22
Os10g0490533 96 2e-20
>Os04g0364800 Barwin-related endoglucanase domain containing protein
Length = 183
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 153/183 (83%), Positives = 153/183 (83%)
Query: 1 MAMTNCXXXXXXXXXXXXXXPGLSRGDGECNPSGAIRSSTTHRCQDCCKAGQXXXXXXXX 60
MAMTNC PGLSRGDGECNPSGAIRSSTTHRCQDCCKAGQ
Sbjct: 1 MAMTNCLLALAIAGVVLVSLPGLSRGDGECNPSGAIRSSTTHRCQDCCKAGQSYPTYTCS 60
Query: 61 XXXXXXXXDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRI 120
DAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRI
Sbjct: 61 PPTTGSSTDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRI 120
Query: 121 NANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITW 180
NANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITW
Sbjct: 121 NANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITW 180
Query: 181 SDA 183
SDA
Sbjct: 181 SDA 183
>Os02g0637000 Barwin-related endoglucanase domain containing protein
Length = 192
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/193 (65%), Positives = 135/193 (69%), Gaps = 11/193 (5%)
Query: 1 MAMTNCXXXXXXXXXXXXXXPGLSRGD----------GECNPSGAIRSSTTHRCQDCCKA 50
MA TNC PGLSRGD G CNPSG +R S +H CQDCCKA
Sbjct: 1 MATTNCLLALAIAGLVLVSLPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKA 60
Query: 51 GQXXXXXXXXXXXXXXXXDAVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAG 110
G+ AVMTLNDF+AGGDGG PSECD +H NTE VVALSTGWYA
Sbjct: 61 GRSYPTYACSPATTGST-KAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYAN 119
Query: 111 GSRCGKSVRINANGRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITG 170
G RC K++RINANGRSVLAKVVDECDS GCD+EHAYQPPCRPNVVDASQAVWDAL ITG
Sbjct: 120 GRRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITG 179
Query: 171 EDVGEYDITWSDA 183
EDVGEYDITWSDA
Sbjct: 180 EDVGEYDITWSDA 192
>Os10g0490100 Virulence factor, pectin lyase fold family protein
Length = 213
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/163 (49%), Positives = 99/163 (60%), Gaps = 10/163 (6%)
Query: 29 ECNPSGAIRSSTTHRCQ-----DCCKAGQXXXXXXXXXXXXX--XXXDAVMTLNDFDAGG 81
C PSGAI + T+ C +CC+ G A++TLN F GG
Sbjct: 53 SCQPSGAI-TGTSGDCNADNGSECCQDGVQYMTYACSPPVAAGGTGTAALLTLNSFADGG 111
Query: 82 DGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINANG-RSVLAKVVDECDSQRG 140
DGGG C ++ + +LVVALSTGW+ G SRC K V I A+G SV A VVDECDSQRG
Sbjct: 112 DGGGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRG 171
Query: 141 CDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSDA 183
CD +H ++PPCR N+VD S AVWDALG+ +D GE ITWSDA
Sbjct: 172 CDSDHNFEPPCRNNIVDGSPAVWDALGLNKDD-GEAQITWSDA 213
>Os10g0490666
Length = 216
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 4/116 (3%)
Query: 70 AVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYA--GGSRCGKSVRINA-NGRS 126
A +TLN F GGDGGG S CD +H +T +VVALS+GW G SRC + +R+ A NGRS
Sbjct: 101 ATLTLNSFARGGDGGGRSSCDGRFHPDTAMVVALSSGWLRLDGASRCNRMIRVAAGNGRS 160
Query: 127 VLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSD 182
LA+VVDECDS GCD EH ++PPC +VVD S AVW ALG+ E VGE+ +TWSD
Sbjct: 161 ALARVVDECDSVNGCDAEHNFEPPCPNDVVDGSPAVWKALGLD-EGVGEFKVTWSD 215
>Os10g0489400
Length = 162
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 78/123 (63%), Gaps = 21/123 (17%)
Query: 70 AVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINAN------ 123
AVMT+N F+ G DGGGP+ CD YHS+ EL+VALST W+AGG RC + +RI +
Sbjct: 50 AVMTVNGFEKGEDGGGPAACDGHYHSDGELIVALSTEWFAGGRRCHRRIRITPSEHGRRG 109
Query: 124 ----GRSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDIT 179
R+V A VVDECDS+RGC + +VVD+S AVW ALG+ D GE +T
Sbjct: 110 GGGGRRAVEATVVDECDSRRGCKD----------DVVDSSPAVWRALGLD-TDSGEVRVT 158
Query: 180 WSD 182
WSD
Sbjct: 159 WSD 161
>Os10g0489301
Length = 167
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 80/116 (68%), Gaps = 12/116 (10%)
Query: 70 AVMTLNDFDAGGDGGGPSECDEMYHSNTELVVALSTGWYAGGSRCGKSVRINA--NGRSV 127
AVMT+N F+ G DGGGP+ CD YHS+ LV ALSTGW+AGG RC + +RI + NGRSV
Sbjct: 62 AVMTVNGFEEGEDGGGPAACDGRYHSDRSLVAALSTGWFAGGRRCHRGIRITSRQNGRSV 121
Query: 128 LAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDITWSDA 183
+A VVDECDS+ G C+ ++VD S AVW ALG+ +VGE +TWSDA
Sbjct: 122 VATVVDECDSRHG---------GCKDDIVDTSAAVWSALGL-DTNVGEVPVTWSDA 167
>Os10g0490400 Zinc finger, SWIM-type domain containing protein
Length = 1009
Score = 100 bits (248), Expect = 7e-22, Method: Composition-based stats.
Identities = 48/74 (64%), Positives = 55/74 (74%), Gaps = 4/74 (5%)
Query: 112 SRCGKSVRINANG---RSVLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGI 168
+RCG VRI A+G RSV+AKVVDECDS GCD EH Y+PPC N+VDAS AVWDALG+
Sbjct: 2 ARCGHRVRITASGGSGRSVVAKVVDECDSVHGCDGEHNYEPPCDNNIVDASPAVWDALGL 61
Query: 169 TGEDVGEYDITWSD 182
+ VG ITWSD
Sbjct: 62 D-KSVGMEHITWSD 74
>Os10g0490533
Length = 186
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 75/122 (61%), Gaps = 11/122 (9%)
Query: 70 AVMTLNDFDAGGDGGG-PSECDEMYHSNTELVVALSTGWYAGGSRCGK--------SVRI 120
A++TL FD G D GG P+ CD +H NTELVVALS+GW G + +V
Sbjct: 56 AILTLKVFDHGEDDGGVPTSCDMRFHRNTELVVALSSGWLRLGGGRRRCHRRIRVFAVAG 115
Query: 121 NANGRS-VLAKVVDECDSQRGCDEEHAYQPPCRPNVVDASQAVWDALGITGEDVGEYDIT 179
A+GRS V+A+VVD+CDS GC EE + PPCR N V S VW+ LG+ VGE+++
Sbjct: 116 AASGRSSVVARVVDDCDSVNGCREEDGFAPPCRNNAVGGSPVVWEKLGLNA-SVGEFEVV 174
Query: 180 WS 181
WS
Sbjct: 175 WS 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,567,180
Number of extensions: 265970
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 8
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)