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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0490100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.28 (0.062) R2 : 0.419
β1 : 1.84 (0.235) R2dD : 0.113 R2D : -0.0203
β2 : 1.93 (0.141) R2dC : 0.238 R2C : 0.221
β3 : 3.5 (0.4) R2dE : 0.216 R2E : -0.247
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.2 (1.13) R2dD*E : 0.254 R2D*E : 0.0101
γ1 : 0.285 (0.121) R2dN8 : 0.0109 R2N8 : -0.0394
σ : 1.02
deviance : 476.65
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_____
C
peak time of C : 18.8
E
wheather : radiation
threshold : 39.16
memory length : 4581
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.45 1.02 4.29 1.89 1.89 3.46 2.02 11 0.28 18.7 39.27 4759 14 19
547.92 1.09 4.04 1.23 1.48 1.85 3.28 -- 0.312 18.8 34.96 4917 15.3 22
476.65 1.02 4.28 1.84 1.93 3.5 -- 11.2 0.285 18.8 39.16 4581 14 19
544.26 1.09 4.06 1.27 1.81 1.41 -- -- 0.309 19.2 39.76 4803 16.1 22.3
659.68 1.2 4.25 1.94 -- 3.63 -- 11 0.249 -- 39.14 4821 14 19.1
573.9 1.12 4.02 1.18 1.94 -- 2.06 -- 0.407 18.9 -- -- -- --
584.63 1.13 4.02 1.14 1.94 -- -- -- 0.411 19 -- -- -- --
628.13 1.17 4 1.73 -- 1.87 -- -- 0.238 -- 34.78 563 16.6 22.7
578.18 1.12 4.08 -- 1.84 1.41 -- -- 0.135 18.7 40 2556 16.6 22.5
783.44 1.31 3.98 1.1 -- -- -- -- 0.375 -- -- -- -- --
618.92 1.16 4.05 -- 1.93 -- -- -- 0.284 19 -- -- -- --
629.98 1.17 4.07 -- -- 2.04 -- -- 0.0889 -- 32.44 654 15.8 23.4
815.42 1.33 4.01 -- -- -- -- -- 0.253 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 458.52 humidity 90.0 14400 < th dose independent rect. 6 1
2 458.67 humidity 90.0 14400 > th dose dependent rect. 6 1
3 458.74 humidity 90.0 14400 > th dose independent rect. 6 1
4 463.65 wind 7.0 43200 > th dose dependent rect. 18 1
5 464.11 wind 9.0 43200 > th dose independent rect. 18 1
10 468.21 humidity 90.0 14400 > th dose dependent rect. 5 10
12 468.65 wind 9.0 43200 < th dose independent rect. 18 1
28 472.63 humidity 90.0 14400 > th dose dependent sin 2 NA
32 473.01 humidity 90.0 14400 > th dose dependent rect. 1 17
78 476.24 wind 5.0 14400 < th dose independent rect. 18 1
99 477.10 wind 3.0 43200 < th dose dependent rect. 3 2
101 477.13 humidity 90.0 14400 < th dose independent rect. 24 17
111 477.59 humidity 90.0 14400 > th dose independent rect. 24 17
115 477.75 humidity 90.0 14400 > th dose independent rect. 1 15
124 477.91 radiation 40.0 4320 < th dose independent rect. 19 14
137 478.35 radiation 40.0 4320 < th dose independent rect. 22 11
140 478.43 radiation 40.0 4320 < th dose independent rect. 14 19
145 478.61 wind 1.0 43200 > th dose dependent rect. 3 1
163 478.96 humidity 70.0 14400 < th dose independent rect. 14 1
171 479.14 radiation 40.0 4320 < th dose independent rect. 7 2
172 479.17 humidity 70.0 14400 > th dose independent rect. 14 1
174 479.33 atmosphere 1005.0 14400 < th dose independent rect. 17 1
176 479.35 radiation 40.0 4320 > th dose dependent rect. 14 19
188 479.74 radiation 40.0 4320 < th dose independent rect. 5 4
202 480.20 wind 3.0 270 > th dose independent rect. 10 8
203 480.22 radiation 40.0 4320 < th dose independent rect. 3 6
204 480.23 wind 3.0 14400 > th dose dependent rect. 18 1
209 480.41 atmosphere 1005.0 14400 > th dose independent rect. 17 1
214 480.57 wind 3.0 43200 < th dose independent rect. 3 1
223 480.74 wind 3.0 43200 > th dose independent rect. 3 1
232 480.94 humidity 90.0 14400 > th dose independent rect. 1 7
238 481.09 radiation 40.0 4320 > th dose dependent rect. 14 1
245 481.25 humidity 90.0 14400 > th dose independent sin 4 NA
256 481.56 humidity 90.0 14400 > th dose independent rect. 24 10
287 481.79 humidity 80.0 43200 > th dose dependent rect. 9 1
290 481.84 radiation 40.0 4320 < th dose dependent rect. 18 7
308 482.12 humidity 90.0 14400 < th dose independent sin 5 NA
310 482.19 atmosphere 1005.0 43200 < th dose independent rect. 14 1
334 482.66 atmosphere 1005.0 43200 > th dose independent rect. 16 5
343 482.71 humidity 90.0 14400 < th dose independent rect. 24 10
348 482.82 atmosphere 1005.0 43200 > th dose independent rect. 14 7
350 482.83 atmosphere 1005.0 43200 < th dose independent rect. 13 7
360 482.98 atmosphere 1005.0 43200 > th dose independent rect. 14 14
381 483.09 atmosphere 1005.0 43200 > th dose independent rect. 11 9
388 483.14 atmosphere 1005.0 43200 > th dose independent rect. 14 1
398 483.24 atmosphere 1005.0 43200 < th dose independent rect. 11 8
400 483.24 humidity 90.0 14400 > th dose dependent rect. 24 3
401 483.26 atmosphere 1005.0 43200 < th dose independent rect. 13 4
448 483.53 temperature 25.0 14400 > th dose dependent rect. 1 1
449 483.54 atmosphere 1005.0 43200 > th dose independent rect. 13 4
464 483.65 radiation 1.0 14400 > th dose independent rect. 18 14
474 483.71 atmosphere 1005.0 43200 < th dose independent rect. 13 15
523 484.01 radiation 1.0 14400 > th dose independent rect. 18 12
526 484.02 humidity 90.0 43200 > th dose dependent rect. 16 1
556 484.20 atmosphere 1005.0 43200 > th dose independent sin 17 NA
560 484.20 humidity 90.0 14400 > th dose dependent rect. 10 22
595 484.35 humidity 90.0 14400 > th dose dependent rect. 5 23
598 484.39 radiation 40.0 4320 > th dose independent rect. 7 2
623 484.44 radiation 20.0 4320 > th dose independent rect. 6 2
647 484.50 humidity 90.0 14400 < th dose independent rect. 14 3
652 484.53 radiation 40.0 14400 < th dose dependent rect. 18 10
679 484.64 radiation 20.0 4320 > th dose dependent rect. 7 1
710 484.73 humidity 90.0 14400 > th dose dependent no NA NA
748 484.87 wind 3.0 43200 > th dose dependent rect. 5 1
758 484.92 humidity 80.0 43200 > th dose dependent rect. 8 9
760 484.94 humidity 80.0 14400 < th dose independent rect. 9 1
773 484.98 humidity 90.0 14400 > th dose dependent rect. 13 23
785 485.05 humidity 90.0 43200 > th dose independent rect. 7 10
789 485.06 radiation 1.0 14400 < th dose independent rect. 18 14
793 485.09 wind 1.0 270 > th dose dependent rect. 11 7
798 485.12 precipitation 0.1 43200 < th dose independent rect. 15 2
799 485.12 precipitation 0.1 43200 < th dose dependent rect. 15 2
807 485.15 atmosphere 1005.0 43200 < th dose independent sin 17 NA
809 485.17 radiation 1.0 14400 > th dose independent rect. 4 2
844 485.23 radiation 1.0 14400 < th dose independent rect. 22 10
858 485.26 precipitation 0.1 43200 > th dose independent rect. 7 1
866 485.28 humidity 90.0 43200 > th dose independent rect. 9 1
868 485.30 humidity 70.0 14400 > th dose independent rect. 11 5
871 485.31 precipitation 0.1 43200 > th dose independent rect. 15 2
875 485.32 radiation 1.0 14400 < th dose independent rect. 3 5
891 485.40 humidity 90.0 43200 > th dose independent rect. 15 3
922 485.52 precipitation 0.1 43200 > th dose dependent rect. 3 11
946 485.63 humidity 90.0 43200 < th dose independent rect. 7 10
954 485.67 humidity 90.0 14400 < th dose independent rect. 15 1
957 485.67 precipitation 0.1 43200 > th dose dependent rect. 7 1
976 485.73 precipitation 0.1 43200 > th dose dependent rect. 4 4
995 485.81 precipitation 0.1 43200 > th dose dependent rect. 15 2
998 485.84 radiation 1.0 14400 > th dose independent rect. 18 18