BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0485600 Os10g0485600|Os10g0485600
(1458 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0485600 DEAD/DEAH box helicase, N-terminal domain cont... 2846 0.0
Os01g0909200 DEAD/DEAH box helicase, N-terminal domain cont... 1126 0.0
Os03g0583900 DEAD/DEAH box helicase, N-terminal domain cont... 293 7e-79
Os04g0509300 Protein of unknown function DUF283 domain cont... 260 6e-69
Os09g0315100 Ribonuclease III domain containing protein 129 2e-29
Os06g0358800 Ribonuclease III domain containing protein 117 7e-26
Os05g0271300 Ribonuclease III domain containing protein 99 3e-20
Os01g0551100 Ribonuclease III domain containing protein 71 7e-12
>Os10g0485600 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1458
Score = 2846 bits (7378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1382/1458 (94%), Positives = 1382/1458 (94%)
Query: 1 MADDEAAVXXXXXXXXXXXXXXXXXXXXGSRPTADTTPRTSQLVEVFEAALRGNTIAVLD 60
MADDEAAV GSRPTADTTPRTSQLVEVFEAALRGNTIAVLD
Sbjct: 1 MADDEAAVLPPPPPLPPPCRPHRQLRPRGSRPTADTTPRTSQLVEVFEAALRGNTIAVLD 60
Query: 61 TGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSG 120
TGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSG
Sbjct: 61 TGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTVHLVHQQFEVIREYTDLDVMMCSG 120
Query: 121 ASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFLTMSAVSLLIFDECHRACGSHPY 180
ASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFLTMSAVSLLIFDECHRACGSHPY
Sbjct: 121 ASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRHAFLTMSAVSLLIFDECHRACGSHPY 180
Query: 181 ARIMKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQIFSDEFDSLLVGLQES 240
ARIMKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQIFSDEFDSLLVGLQES
Sbjct: 181 ARIMKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQIFSDEFDSLLVGLQES 240
Query: 241 PSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEVVKIHIESVKPLCDSEDCIF 300
PSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEVVKIHIESVKPLCDSEDCIF
Sbjct: 241 PSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEVVKIHIESVKPLCDSEDCIF 300
Query: 301 SKASLCLHMSYFKEALSLIEEILPQGYGELMKSESGSEELTKRGYISSKVNTLINIFKSF 360
SKASLCLHMSYFKEALSLIEEILPQGYGELMKSESGSEELTKRGYISSKVNTLINIFKSF
Sbjct: 301 SKASLCLHMSYFKEALSLIEEILPQGYGELMKSESGSEELTKRGYISSKVNTLINIFKSF 360
Query: 361 GSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYLTGGSTSKDALSPAVQRFTLDL 420
GSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYLTGGSTSKDALSPAVQRFTLDL
Sbjct: 361 GSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYLTGGSTSKDALSPAVQRFTLDL 420
Query: 421 FRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSRGRARRNNSEFILMIERG 480
FRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSRGRARRNNSEFILMIERG
Sbjct: 421 FRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSRGRARRNNSEFILMIERG 480
Query: 481 NLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDLSIQGMYTYQVQSTGATITADCCVNLI 540
NLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDLSIQGMYTYQVQSTGATITADCCVNLI
Sbjct: 481 NLQQQEHIFRMIQTGYYVKNCALYRHPNALSYDLSIQGMYTYQVQSTGATITADCCVNLI 540
Query: 541 RKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAAFQSIVGPXXXXXXXXXXXXXX 600
RKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAAFQSIVGP
Sbjct: 541 RKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAAFQSIVGPLSSSSNLSKQLVSL 600
Query: 601 EACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGPGTTKRKELHGTTCVLALSGTW 660
EACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGPGTTKRKELHGTTCVLALSGTW
Sbjct: 601 EACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGPGTTKRKELHGTTCVLALSGTW 660
Query: 661 IHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNKMVYTTVT 720
IHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNKMVYTTVT
Sbjct: 661 IHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNKMVYTTVT 720
Query: 721 PRXXXXXXXXXXXXXXXXXEFFFNGIFGRLFHGSRKSGAQRDFIFKKGHEIQWNTESMYL 780
PR EFFFNGIFGRLFHGSRKSGAQRDFIFKKGHEIQWNTESMYL
Sbjct: 721 PRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSGAQRDFIFKKGHEIQWNTESMYL 780
Query: 781 LLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIH 840
LLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIH
Sbjct: 781 LLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQGDENVIPVNCIPQKRRGGQEEIIH 840
Query: 841 LANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMYGSTGKPLLMEKEQIHA 900
LANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMYGSTGKPLLMEKEQIHA
Sbjct: 841 LANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTAEDSFDEMYGSTGKPLLMEKEQIHA 900
Query: 901 RVPPELLIHLDILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSD 960
RVPPELLIHLDILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSD
Sbjct: 901 RVPPELLIHLDILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSD 960
Query: 961 MRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHR 1020
MRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHR
Sbjct: 961 MRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHR 1020
Query: 1021 RYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXWVMRWFGIDIKC 1080
RYIRDDPSFFVGKPCDRGHRWMCSKTISDCVE WVMRWFGIDIKC
Sbjct: 1021 RYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDIKC 1080
Query: 1081 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 1140
DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ
Sbjct: 1081 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 1140
Query: 1141 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1200
RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS
Sbjct: 1141 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1200
Query: 1201 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE 1260
GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE
Sbjct: 1201 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE 1260
Query: 1261 IFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELLVA 1320
IFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELLVA
Sbjct: 1261 IFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELLVA 1320
Query: 1321 QGHDRNXXXXXXXXXSRILADLKQQQGLSIKQCLSKAKQLDIVTSDLQFDLTSLCFHSKW 1380
QGHDRN SRILADLKQQQGLSIKQCLSKAKQLDIVTSDLQFDLTSLCFHSKW
Sbjct: 1321 QGHDRNKKRAKAKAASRILADLKQQQGLSIKQCLSKAKQLDIVTSDLQFDLTSLCFHSKW 1380
Query: 1381 RKVDLEVRFSSYARFCSGQCQNSNLWNKGSGLLLLWMGRQQQTSIALFRQSPCTYLTQQP 1440
RKVDLEVRFSSYARFCSGQCQNSNLWNKGSGLLLLWMGRQQQTSIALFRQSPCTYLTQQP
Sbjct: 1381 RKVDLEVRFSSYARFCSGQCQNSNLWNKGSGLLLLWMGRQQQTSIALFRQSPCTYLTQQP 1440
Query: 1441 LHFKCLERLKIRLRESTW 1458
LHFKCLERLKIRLRESTW
Sbjct: 1441 LHFKCLERLKIRLRESTW 1458
>Os01g0909200 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1651
Score = 1126 bits (2913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1488 (42%), Positives = 872/1488 (58%), Gaps = 172/1488 (11%)
Query: 31 RPTADTTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIV 90
R D TPR QL +V+E A+R NTIA+LDTG+GKTM+AVML +E + R A + ++
Sbjct: 25 RECQDFTPRRYQL-DVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGK-VI 82
Query: 91 VFLAPTVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILL 150
+FLAPTV LV QQ EVI +TD +V GA V +W W+E++ + +++VMTPQ+ L
Sbjct: 83 IFLAPTVQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFL 142
Query: 151 DALRHAFLTMSAVSLLIFDECHRACGSHPYARIMK------------------------- 185
ALR+AFL + VSL+IFDECH A G+HPY RIMK
Sbjct: 143 QALRNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGI 202
Query: 186 --------------------IYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQI 225
IY V DR E+E P + +YYD+ V F++L +L +
Sbjct: 203 SSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGV 262
Query: 226 FSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEVVKIH 285
++D+L+ LQ S+ +KD D+I + S++ LS+ KI Y L+D+G I SE KI
Sbjct: 263 LCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKIC 322
Query: 286 IES------VKPLCDSEDC--------IFSKASLCLHMSYFKEALSLIEEILPQGYGELM 331
IE +K + D+ D +F++ S LHM +F+EAL LI++ L QG L+
Sbjct: 323 IERGQEKGWLKEVVDATDQQTDANGSRLFAENS-ALHMKFFEEALHLIDKRLQQGIDMLL 381
Query: 332 KSESGSEELTKRGYISSKVNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNF 391
SESG E K GYIS K+ LI IF SF +S CLIFVDR ITA+ ++R ++ I +
Sbjct: 382 NSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHL 441
Query: 392 SCFSISYLTGGSTSKDALSPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFD 451
+ F++S+LTGG +S DAL+P +Q+ TLD FR+GKVNLLFTTDV EEG+ VP CSCVIRFD
Sbjct: 442 AHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFD 501
Query: 452 LPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYRHPNALS 511
LPRT SYVQSRGRAR+ +S++ILMIERGN++Q + I ++++ + A R LS
Sbjct: 502 LPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLS 561
Query: 512 YD-LSIQGMYTYQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKC 570
+ + + Y V +TGA +TAD ++++ +YCEKLP+D+ + PKP+FE T D + C
Sbjct: 562 PGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVC 621
Query: 571 TLTLPRNAAFQSIVGPXXXXXXXXXXXXXXEACKKLHQLGELNDHLVPLTEEPMDTDFTT 630
TL LP +A Q +VGP +ACKKLH+LG L+DHL E+P+ + +
Sbjct: 622 TLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPV-PEIVS 680
Query: 631 ADEKCISGPGTTKRKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVL 690
++ +G GTTKRKELHGTT + A SG W+ + L +Y+++F+CDQ G+ Y+ FVL
Sbjct: 681 KNKG--TGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVL 738
Query: 691 LMEPELDDDVAPSKMDLFLIPNKMVYTTVTPRXXXXXXXXXXXXXXXXXEFFFNGIFGRL 750
L++ L D+VA ++DL+L +KMV T+V+ FNG+FG+L
Sbjct: 739 LIDATLPDEVATLEIDLYL-HDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKL 797
Query: 751 FHGSRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQ 810
F S+ A R+FI K WNT S+YLLLP S ++ I+W I++ A AV+
Sbjct: 798 FTRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPS--FDSNVCINWSVIDAAATAVKL 855
Query: 811 LWSSYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVL-- 868
+ Y ++ + + + G ++IHLANKS +S+KD VVL++HTG+IYT L
Sbjct: 856 MRRIYSENKREL-LGIFDSDQNVG--DLIHLANKSCKANSLKDMVVLAVHTGKIYTALDI 912
Query: 869 -----DLILDTTAE----------DSFDEMYG---------------------------- 885
D D ++ + F + YG
Sbjct: 913 TELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFR 972
Query: 886 ---------STGKPLLMEKEQIHARVPPELLIHLD------------------------- 911
S G P++ K +PPELLI LD
Sbjct: 973 DEGNVVENMSNGTPVV-NKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLA 1031
Query: 912 ------------------ILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMK 953
ILEAITTLRC E FS+ERLELLGDSVLKY V C LFL++P K
Sbjct: 1032 SQLRSEIGYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPNK 1091
Query: 954 HEGQLSDMRSKAVCNATLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIET 1013
EGQLS +R +CNATL+K GI R++QGYVRD AFDPRRW+APGQ+S+RP PC C +++
Sbjct: 1092 DEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCECPVKS 1151
Query: 1014 AFVPSHRRYIRDDPSFFVGKPCDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXWVMRW 1073
V + +I DD + +GK CD+GHRWMCSKTI+DCVE V++W
Sbjct: 1152 EVV-TDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLKW 1210
Query: 1074 FGIDIKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQEL 1133
GI + + L+ + +AS L K N E LEAKL Y+FSVKGLL+EA+THPS QEL
Sbjct: 1211 LGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQEL 1270
Query: 1134 GVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIH 1193
G YCY+RLEFLGD+VLD+LLTR+L+ +H D + GELTDLRSA V+NENFAQ V++N H
Sbjct: 1271 GAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFH 1330
Query: 1194 SHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDF 1253
LQH SG+LL+QITEYV + E L K PKVLGDI+ESIAGA+ +DT
Sbjct: 1331 HFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKL 1390
Query: 1254 NVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQL 1313
++D+VW IFEPLLSP++TP+ L LPPYREL+E C G F+ C +G+ V+ + +QL
Sbjct: 1391 DLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQL 1450
Query: 1314 RDELLVAQGHDRNXXXXXXXXXSRILADLKQQQGLSIKQCLSKAKQLD 1361
++ LLV QG + S +L DL +++GL I + SK +Q +
Sbjct: 1451 KEVLLVRQGFSKKRKDAKAHASSLLLKDL-EEKGLIIPKNASKTEQFE 1497
>Os03g0583900 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1410
Score = 293 bits (750), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 209/657 (31%), Positives = 328/657 (49%), Gaps = 73/657 (11%)
Query: 36 TTPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAP 95
T R QL E E A+RGNT+A L+TGSGKT++AVML R +A RVR ++ RR VFL P
Sbjct: 32 TMARWYQL-EALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDS-RRFAVFLVP 89
Query: 96 TVHLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEEVGRNEIVVMTPQILLDALRH 155
TV LV QQ V+ ++TDL V G V W A W+ ++ E++VMTPQILLD LRH
Sbjct: 90 TVVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRH 149
Query: 156 AFLTMSAVSLLIFDECHRACGSHPYARIMKIYIVEDRNELESFSPP-------TTIVNK- 207
+F + ++LLIFDECH A G+ PYA I K + N S P + I +K
Sbjct: 150 SFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKD 209
Query: 208 ----YYDAYMVDFDNLKSKLQIFSDEFDSLLVGLQESPSNKFKDTD--NI---------- 251
Y + + +NL + ++++ + +S L S K D D NI
Sbjct: 210 LNPHNYSKQISEIENLMNS-KVYTVDSESALSEYIPFASTKIVDFDDSNISSELHANILS 268
Query: 252 ---------------------LETSRKSLSRYHGKILYSLNDLGPIITSEVVKIHIESVK 290
LE +++ +S+ H +Y L +LG + ++ ++
Sbjct: 269 CLNRLNKKHIEALDRKLHGSSLENAKQRISKLHHTFVYCLYNLGVWLAAKAAEVQSYEEN 328
Query: 291 PLCDSEDCIFSKASLCLHMSYFKEALSLIEEILPQGY-GELMKSESGSEELTKRGYISSK 349
L + + K +Y +E + L G+ GE ++S + G ++ K
Sbjct: 329 SLSFWGETL-DKNVEGFIRNYSEEVHRELSCFLKNGHIGEKFPADS------QDGILTPK 381
Query: 350 VNTLINIFKSFGSSNEVLCLIFVDRIITAKAVERFMRGIVNFSCFSISYLTGGSTSKDAL 409
V+ LI + ++ C++FV+R+IT+ +E + I S +++ ++ G +
Sbjct: 382 VHCLIRTLLQYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVKHMAGSRPGLLSQ 441
Query: 410 SPAVQRFTLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSRGRARRN 469
S ++ FR GKV+++ T + EEG+DVP+C+ VIRFD TVCS++QSRGRAR
Sbjct: 442 SRKNHTEIVESFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRGRARME 501
Query: 470 NSEFILMIERGNLQQQEHIFRMIQTGYYVKNCALYR-----HP--NALSYDLSIQGMYTY 522
NS+++L++ RG+++ Q + + + +G ++ +L P N L D Y
Sbjct: 502 NSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPLENTLCEDT------YY 555
Query: 523 QVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGLFKCTLTLPRNAAFQS 582
+V+ST A +T + V LI +C KLP D YF P P F++ G CTL LP+++ Q+
Sbjct: 556 RVESTRAIVTLNSSVPLIHFFCSKLPSDEYFNPLPRFDIDKASG--TCTLHLPKSSPVQT 613
Query: 583 IVGPXXXXXXXXXXXXXXEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGP 639
+ +AC++LH +G L D L+P + P D + E I P
Sbjct: 614 V--NVEGEGSILKETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENKIEQP 668
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 194/381 (50%), Gaps = 28/381 (7%)
Query: 910 LDILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNA 969
L ILEA+TT +C E FS E LE LGDS LKYV LF Y ++HEG L+ M+ + NA
Sbjct: 988 LKILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNA 1047
Query: 970 TLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSF 1029
L + +L GY+ F+PR W+ PC E RD+
Sbjct: 1048 ALCQLACSSNLVGYIHAEEFNPRDWI---------IPCLDYDE-----------RDNKKI 1087
Query: 1030 -FVGKPCDRGHRWMC--SKTISDCVEXXXXXXXXXXXXXXXXWVMRWFGIDIKCDMKLLQ 1086
F+ R M SK I+D VE +M+ G++I+ ++
Sbjct: 1088 SFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPV 1147
Query: 1087 EVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLG 1146
E K + + ++ LE L Y F+ LLLEA+TH S Q G CYQRLEFLG
Sbjct: 1148 ERKISMK----AEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLG 1203
Query: 1147 DSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQ 1206
D++LD L T + Y+ + D P LTDLRSA V+N +A A V++ ++ H+ H S L +
Sbjct: 1204 DAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRK 1263
Query: 1207 ITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLL 1266
++ Y+ + S + +PKVLGD++ESIAGA+++D+ + ++VW + LL
Sbjct: 1264 MSYYLEEFGQSFTGPS-YGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLL 1322
Query: 1267 SPLITPDKLALPPYRELLELC 1287
PL TP+ + P + L E C
Sbjct: 1323 EPLATPETIEPDPVKGLQEFC 1343
>Os04g0509300 Protein of unknown function DUF283 domain containing protein
Length = 1090
Score = 260 bits (664), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 160/436 (36%), Positives = 229/436 (52%), Gaps = 14/436 (3%)
Query: 912 ILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATL 971
ILEA+TT +C E SLER E+LGD+ LKYVVG F+ Y EGQL+ RS V N+ L
Sbjct: 460 ILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHL 519
Query: 972 HKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRP--FPCNCGIETAFVPSHRRYIRDDPSF 1029
++ I + LQ Y+RD F+P ++ APG RP CN +E H+ I D
Sbjct: 520 YELSIRKKLQVYIRDQQFEPTQFFAPG----RPCKVVCNTDVEVRL---HQMDIHPDNRE 572
Query: 1030 FVGKPCDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXWVMRWFGIDIKCDMKLLQEVK 1089
C R H W+ K I+D VE + W GID+ + L V
Sbjct: 573 NCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVL 632
Query: 1090 FNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSV 1149
++S SL DI LE + Y F KGLLL+A HPS + CYQRLEFLGD+V
Sbjct: 633 DSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGG-CYQRLEFLGDAV 691
Query: 1150 LDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITE 1209
L+ ++T +LY+T+ D+ PG++TDLRS V N++ A A V +IH HL S L I++
Sbjct: 692 LEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISK 751
Query: 1210 YVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPL 1269
+ ++ E + L+ C PK LGDI+ES GAV +D+ FN++ VW++ LL P+
Sbjct: 752 F-EMYVKLSNSEKDLLEEPAC--PKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPV 808
Query: 1270 ITPDKLALPPYRELLELCSHIGCFLNSKCTSKGE-EVIIEMSLQLRDELLVAQGHDRNXX 1328
+T + P REL ELC G L K + E +++ + ++ ++++ +RN
Sbjct: 809 LTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSK 868
Query: 1329 XXXXXXXSRILADLKQ 1344
L+ LK
Sbjct: 869 AARKFAAQETLSKLKN 884
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/420 (26%), Positives = 165/420 (39%), Gaps = 35/420 (8%)
Query: 522 YQVQSTGATITADCCVNLIRKYCEKLPKDRYFMPKPSFEVTIEDGL--FKCTLTLPRNAA 579
YQV +TGA+I+ C V+L+ YC+ LP+D +F P P F DG+ C L LP NAA
Sbjct: 4 YQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYI--DGIEGIICRLILPPNAA 61
Query: 580 FQSIVGPXXXXXXXXXXXXXXEACKKLHQLGELNDHLVPLTEEPMDTDFTTADEKCISGP 639
F+ G +AC KLH+LG L D L+P + T +
Sbjct: 62 FRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRKNKVSVTNNSSNNKVE 121
Query: 640 GTTKRKELHG--TTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELD 697
+ R+ELH VL SG + N L+ Y + F+ E Y F L + L
Sbjct: 122 DDSLREELHEMLIPAVLKPSGLKLDSLSN--LHFYYVKFIPIPEDRRYQMFGLFVINPLP 179
Query: 698 DDVAPSKMDLFLIPNKMVYTTVTPRXXXXXXXXXXXXXXXXXEFFFNGIFGRLFHGSRKS 757
+ ++DL L ++V + E + R S
Sbjct: 180 VEAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCLKILLDRSEFTSPH- 238
Query: 758 GAQRDFIFKKGHEIQWNTES-MYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWSSYQ 816
K G+++ S YLLLP++ Y D I W A+E C L S
Sbjct: 239 -------VKLGNDVTLEINSTFYLLLPIKQKCY-GDRFMIDWPAVERC------LSSPIF 284
Query: 817 GDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILDTTA 876
D + V+ E + L + + + SVV S H I+ +D ILD
Sbjct: 285 KDPIDVSVHA-----SYSSNESLRLLDGIFSKTDVVGSVVFSPHNN-IFFFVDGILDEI- 337
Query: 877 EDSFDEMYGSTGKPLLMEKEQIHARVPPELLIHLDILEAITTL---RCCETFSLERLELL 933
+++ E G+T E+ +I P + L+ + + L R ET E ELL
Sbjct: 338 -NAWSEHSGATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGRELL 396
>Os09g0315100 Ribonuclease III domain containing protein
Length = 245
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 910 LDILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNA 969
L ILEA+TT +C E FS E LE LGDS LKYV LF Y ++HEG L+ M+ + NA
Sbjct: 16 LQILEALTTKKCQEEFSQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNA 75
Query: 970 TLHKHGIWRSLQGYVRDNAFDPRRWVAPGQISLRPFPCNCGIETAFVPSHRRYIRDDPSF 1029
L + +L GY+ F+PR W+ P + + +F+ + Y + S
Sbjct: 76 ALCQLACSSNLVGYIHAEEFNPRDWIIP----CLDYDERGNKKISFLAPNGMYSQRKMS- 130
Query: 1030 FVGKPCDRGHRWMCSKTISDCVEXXXXXXXXXXXXXXXXWVMRWFGIDIKCDMKLLQEVK 1089
+ SK I+D VE +M+ G++I+ ++ E K
Sbjct: 131 ------------IKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGMNIEFHTEIPVERK 178
Query: 1090 FNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSV 1149
+ + D+ LE L Y F+ LLLEA+TH S Q G CYQRLEFLGD++
Sbjct: 179 ISM----KAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAI 234
Query: 1150 LDLLLTRHLYA 1160
LD L T + Y+
Sbjct: 235 LDHLFTEYYYS 245
>Os06g0358800 Ribonuclease III domain containing protein
Length = 299
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 111/191 (58%), Gaps = 14/191 (7%)
Query: 1102 NDIEELEAKLKYNFSVKGLLLEAITHPSLQ---ELGVDYCYQRLEFLGDSVLDLLLTRHL 1158
++ +E+ L Y F K L+ EA+TH S GV Y+RLE+LGD+VL +++R +
Sbjct: 37 GEVAAVESLLGYEFRDKALVEEALTHGSFYYPYRPGV--TYERLEYLGDAVLTCVVSREV 94
Query: 1159 YATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQ 1218
+ T+ + PG LT LR+A V E A+ V + +H L+H + L QIT+++
Sbjct: 95 FLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIE------ 148
Query: 1219 GKESEFLQHTT--CKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLA 1276
+ S + H+ PKVL D++ES+ GA++ D++FN ++VW++F+ L PLI+ + L
Sbjct: 149 -ELSMYPIHSNGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLG 207
Query: 1277 LPPYRELLELC 1287
P EL E C
Sbjct: 208 KHPVSELFEFC 218
>Os05g0271300 Ribonuclease III domain containing protein
Length = 344
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 39/239 (16%)
Query: 1107 LEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVD 1166
+E L+Y F LL EA+TH S + V YQRLEF+GDS L L + LY T+ +
Sbjct: 34 VERLLRYQFRDGRLLEEALTHQSFADDAV--SYQRLEFVGDSALGLAFSNFLYLTNPTLG 91
Query: 1167 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS---GILLEQITEYVRSNLECQGKESE 1223
PG L+ LR+A +S E A+ VR++++ L+ +L+ Q E V+ E
Sbjct: 92 PGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVP 151
Query: 1224 FLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE----------------------- 1260
+ + K PKVL DI+E+IA AV++D F+++ +W+
Sbjct: 152 Y-GGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQEIRWTVNTNNIKDW 210
Query: 1261 ----------IFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEM 1309
+ L P+IT + + P L ELC G K KG ++ +
Sbjct: 211 INNFIYGKRLVTRWLFEPIITAETIDEQPVTMLHELCQKHGKMAQFKTWQKGGMTVVNV 269
>Os01g0551100 Ribonuclease III domain containing protein
Length = 256
Score = 70.9 bits (172), Expect = 7e-12, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 90/178 (50%), Gaps = 10/178 (5%)
Query: 1113 YNFSVKGLLL--EAITHP--SLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPG 1168
Y+F G LL +A+TH E G +QRLEFLGD+ L L Y +D G
Sbjct: 31 YSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGLDQG 90
Query: 1169 ELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHT 1228
+LT LRSA VS + A+ VR ++ L+ + Q E R +G S
Sbjct: 91 DLTVLRSANVSTQKLARVAVRRRLYPLLRRYN--CAPQDHEVSRFTKSVEGPYS----GD 144
Query: 1229 TCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLEL 1286
+ P+VL DI+E+I GAV++D+ +++++ ++ + L P+IT L P L EL
Sbjct: 145 PIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPESMLNEL 202
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 46,944,659
Number of extensions: 1919684
Number of successful extensions: 3751
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 3718
Number of HSP's successfully gapped: 13
Length of query: 1458
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1345
Effective length of database: 11,135,619
Effective search space: 14977407555
Effective search space used: 14977407555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 163 (67.4 bits)