Os10g0485600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os10g0485600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.24 | 0.513 | 4.08 | 0.184 | 0.462 | -1.48 | 0.0612 | -2.73 | 0.00905 | 22 | 20 | 6362 | -- | -- |
| 125.68 | 0.522 | 4.2 | -0.06 | 0.49 | -0.855 | 0.162 | -- | -0.0851 | 21.8 | 21.07 | 6636 | -- | -- |
| 119.23 | 0.509 | 4.08 | 0.177 | 0.46 | -1.49 | -- | -2.74 | 0.00782 | 22 | 20.02 | 6410 | -- | -- |
| 125.59 | 0.522 | 4.2 | -0.12 | 0.47 | -0.849 | -- | -- | -0.0928 | 22 | 21.01 | 6669 | -- | -- |
| 131.65 | 0.534 | 4.07 | 0.146 | -- | -1.57 | -- | -2.85 | -0.00688 | -- | 20.08 | 6606 | -- | -- |
| 140.51 | 0.556 | 4.14 | 0.482 | 0.491 | -- | 0.132 | -- | 0.192 | 22.1 | -- | -- | -- | -- |
| 140.58 | 0.555 | 4.14 | 0.477 | 0.491 | -- | -- | -- | 0.192 | 22.1 | -- | -- | -- | -- |
| 138.58 | 0.548 | 4.21 | -0.128 | -- | -0.878 | -- | -- | -0.121 | -- | 21 | 6663 | -- | -- |
| 125.6 | 0.522 | 4.19 | -- | 0.458 | -0.754 | -- | -- | -0.0734 | 21.9 | 21.7 | 6709 | -- | -- |
| 155.13 | 0.582 | 4.12 | 0.484 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 146.57 | 0.566 | 4.15 | -- | 0.493 | -- | -- | -- | 0.139 | 22.2 | -- | -- | -- | -- |
| 138.53 | 0.548 | 4.19 | -- | -- | -0.804 | -- | -- | -0.0968 | -- | 21.76 | 6644 | -- | -- |
| 161.29 | 0.593 | 4.14 | -- | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 2 | 122.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 11 | 122.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 21 | 122.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 9 |
| 33 | 123.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 50 | 123.23 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 89 | 123.46 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 90 | 123.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 16 |
| 147 | 123.68 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 172 | 123.79 | wind | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 184 | 123.83 | wind | 9 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 185 | 123.83 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 190 | 123.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 8 |
| 300 | 124.07 | temperature | 20 | 14400 | < th | dose dependent | sin | 5 | NA |
| 334 | 124.16 | wind | 5 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 341 | 124.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 361 | 124.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 366 | 124.25 | wind | 5 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 380 | 124.30 | wind | 5 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 450 | 124.47 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 470 | 124.49 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 18 |
| 477 | 124.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 12 |
| 483 | 124.51 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 534 | 124.58 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 536 | 124.58 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 564 | 124.60 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 570 | 124.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 19 |
| 589 | 124.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 592 | 124.63 | wind | 5 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 646 | 124.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 650 | 124.70 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 688 | 124.73 | wind | 5 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 733 | 124.75 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 795 | 124.79 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 870 | 124.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 900 | 124.90 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 903 | 124.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 924 | 124.93 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 940 | 124.95 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 989 | 124.99 | wind | 5 | 1440 | > th | dose independent | rect. | 20 | 17 |