Os05g0271300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribonuclease III domain containing protein.
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Os05g0271300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribonuclease III domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.46 | 0.442 | 8.78 | 1.45 | 1.99 | 1.01 | -0.0881 | 0.488 | -0.00738 | 17.1 | 7.306 | 261 | 6.26 | 21.2 |
| 88.93 | 0.439 | 8.79 | 1.47 | 2.01 | 1 | 0.185 | -- | -0.00808 | 17.2 | 7.5 | 254 | 6.27 | 21.2 |
| 88.43 | 0.438 | 8.78 | 1.45 | 2.01 | 1.03 | -- | 0.474 | -0.00115 | 17.2 | 7.312 | 249 | 6.34 | 21.2 |
| 88.94 | 0.439 | 8.78 | 1.47 | 2.02 | 1.02 | -- | -- | -0.00206 | 17.2 | 7.302 | 249 | 6.35 | 21.1 |
| 146.08 | 0.563 | 8.77 | 1.74 | -- | 2.29 | -- | -0.508 | 0.0598 | -- | 32.76 | 297 | 7.53 | 16.8 |
| 116.84 | 0.507 | 8.81 | 1.57 | 2.57 | -- | 0.466 | -- | -0.0422 | 17.5 | -- | -- | -- | -- |
| 117.37 | 0.507 | 8.81 | 1.57 | 2.58 | -- | -- | -- | -0.0401 | 17.5 | -- | -- | -- | -- |
| 117.76 | 0.505 | 8.75 | 1.38 | -- | 2.1 | -- | -- | 0.00919 | -- | 8.1 | 390 | 6.95 | 15.2 |
| 142.07 | 0.555 | 8.79 | -- | 2.06 | 1.2 | -- | -- | -0.134 | 17.2 | 6.581 | 252 | 6.6 | 20.9 |
| 462.6 | 1.01 | 8.77 | 1.49 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 182.37 | 0.632 | 8.85 | -- | 2.55 | -- | -- | -- | -0.215 | 17.5 | -- | -- | -- | -- |
| 158.9 | 0.587 | 8.8 | -- | -- | 2.74 | -- | -- | -0.0412 | -- | 6.8 | 441 | 6.8 | 14.7 |
| 520.8 | 1.07 | 8.81 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.14 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 4 | 90.41 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 12 | 91.74 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 16 | 91.98 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 17 | 91.99 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 20 | 92.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 21 | 92.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 30 | 92.61 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 32 | 92.76 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 38 | 92.92 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 42 | 93.06 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 44 | 93.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 46 | 93.11 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 47 | 93.11 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 49 | 93.11 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 50 | 93.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 51 | 93.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 54 | 93.13 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 56 | 93.13 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 58 | 93.17 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 62 | 93.22 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 63 | 93.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 64 | 93.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 65 | 93.31 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 77 | 93.35 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 80 | 93.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 95 | 93.74 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 106 | 93.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 112 | 93.99 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 147 | 94.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 152 | 94.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 155 | 94.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 171 | 94.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 172 | 94.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 183 | 94.61 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 185 | 94.61 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 187 | 94.61 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 188 | 94.61 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 190 | 94.61 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 191 | 94.61 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 192 | 94.61 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 196 | 94.67 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 230 | 94.82 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 234 | 94.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 270 | 95.06 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 332 | 95.40 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 337 | 95.42 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 338 | 95.43 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 347 | 95.50 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 367 | 95.60 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 382 | 95.63 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 427 | 95.81 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 435 | 95.85 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 439 | 95.87 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 440 | 95.88 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 448 | 95.94 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 526 | 96.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 541 | 96.41 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 562 | 96.55 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 671 | 97.00 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 740 | 97.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 778 | 97.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 784 | 97.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 798 | 97.55 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 802 | 97.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 805 | 97.62 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 806 | 97.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 807 | 97.64 | radiation | 10.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 819 | 97.75 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 831 | 97.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 896 | 98.04 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 901 | 98.06 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 902 | 98.07 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 903 | 98.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 906 | 98.07 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 908 | 98.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 909 | 98.07 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 910 | 98.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 926 | 98.10 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 937 | 98.13 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 950 | 98.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 968 | 98.20 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 21 |