BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0485500 Os10g0485500|AK070826
(368 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0485500 Peptidoglycan-binding LysM domain containing p... 639 0.0
Os03g0110600 Peptidoglycan-binding LysM domain containing p... 175 6e-44
Os06g0729900 Peptidoglycan-binding LysM domain containing p... 165 6e-41
>Os10g0485500 Peptidoglycan-binding LysM domain containing protein
Length = 368
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/368 (86%), Positives = 319/368 (86%)
Query: 1 MSRPHLPKDDHAFANGFLFDGVARRPGXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXX 60
MSRPHLPKDDHAFANGFLFDGVARRPG Q
Sbjct: 1 MSRPHLPKDDHAFANGFLFDGVARRPGEIEEAAAFAAAADVAITIAAEQSGSPSSSTAPP 60
Query: 61 XXXCGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPP 120
CGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPP
Sbjct: 61 MSSCGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPP 120
Query: 121 STYQQNGSYEGDDRECTPPRRLHDDILDSVLRTPKHKASPAMSLLQGYYGLTPPPKKDTT 180
STYQQNGSYEGDDRECTPPRRLHDDILDSVLRTPKHKASPAMSLLQGYYGLTPPPKKDTT
Sbjct: 121 STYQQNGSYEGDDRECTPPRRLHDDILDSVLRTPKHKASPAMSLLQGYYGLTPPPKKDTT 180
Query: 181 HEGTEMAVYRKGKSVFLDDDPWFGEPPDSDPFPFQHRKTRSLAIGSSLLNGETEENGDSE 240
HEGTEMAVYRKGKSVFLDDDPWFGEPPDSDPFPFQHRKTRSLAIGSSLLNGETEENGDSE
Sbjct: 181 HEGTEMAVYRKGKSVFLDDDPWFGEPPDSDPFPFQHRKTRSLAIGSSLLNGETEENGDSE 240
Query: 241 KLIRRRQKADGELLPREENGSSAVLARAGKGLALRPKSGSRQDLNKSQQNLIALAEPSFG 300
KLIRRRQKADGELLPREENGSSAVLARAGKGLALRPKSGSRQDLNKSQQNLIALAEPSFG
Sbjct: 241 KLIRRRQKADGELLPREENGSSAVLARAGKGLALRPKSGSRQDLNKSQQNLIALAEPSFG 300
Query: 301 DGLHAVRKSSSTPEFQEPEXXXXXXXXXXXXXXKWTLKPDAFTLPLPLPLFDNIPKPIAA 360
DGLHAVRKSSSTPEFQEPE KWTLKPDAFTLPLPLPLFDNIPKPIAA
Sbjct: 301 DGLHAVRKSSSTPEFQEPESNSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAA 360
Query: 361 WRNKAARD 368
WRNKAARD
Sbjct: 361 WRNKAARD 368
>Os03g0110600 Peptidoglycan-binding LysM domain containing protein
Length = 210
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 16/166 (9%)
Query: 211 PFPFQHRKTRSLAIGSSLLNGETEENGDSEKLIRRRQKADGELLPREENGSSAVLARAGK 270
P P QH K RSL+ G SL+NGE + D+EK IRRRQK+D E RE N S VL +AG
Sbjct: 53 PLPGQHTKARSLSTGFSLVNGEVD---DAEKPIRRRQKSDAEFSTREGN-SGGVLMKAGP 108
Query: 271 GLALRPKSGSRQDLNKSQQNLIALAEPSFGDGLHAVRKSSSTPEFQEPEXXXXXXXXXXX 330
GLALRPKSGSR ++N SQQ+L+A A PS+GDGL AVRKSSSTPEFQ+ +
Sbjct: 109 GLALRPKSGSRPEINNSQQDLVATAVPSYGDGLQAVRKSSSTPEFQDSD----NSIASVW 164
Query: 331 XXXKWTLKPDAFTLPLPL--------PLFDNIPKPIAAWRNKAARD 368
KW LKPDAFTLPLP+ P+FD PK IAAWRNKAARD
Sbjct: 165 LKSKWNLKPDAFTLPLPILLLDSIPKPIFDTFPKQIAAWRNKAARD 210
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 64 CGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPPSTY 123
CG+Y+LHRV + DTLAG+AIKYGVEVAD+KR+NGL+TDLQMFAHKTLRIPLPG+H +
Sbjct: 4 CGRYILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPLPGQHTKARS 63
Query: 124 QQNG----SYEGDDRECTPPRRLHDD 145
G + E DD E RR D
Sbjct: 64 LSTGFSLVNGEVDDAEKPIRRRQKSD 89
>Os06g0729900 Peptidoglycan-binding LysM domain containing protein
Length = 332
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 160/320 (50%), Gaps = 32/320 (10%)
Query: 67 YMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLPGRHPPSTYQQN 126
Y+ H+V ++DTL G+AIKYGVE++DIKR N L TD QMFAHK L IPLPGR PS+ + N
Sbjct: 27 YLEHQVSRMDTLPGLAIKYGVEISDIKRANSLMTDSQMFAHKMLLIPLPGRPMPSSVRLN 86
Query: 127 GSYEGDDRECTPPRRLHDDILDSV----LRTPKHKASPAMSLLQGYYGLTPPPKKDTTHE 182
GS + R P + + D+ DS+ + K + S AMS LQ YYGLT P T
Sbjct: 87 GSGQKMKRAWAPNNQQNRDVTDSLDSSNYNSSKQQMSLAMSTLQSYYGLT-PQNGAMTDA 145
Query: 183 GTEMAVYRKGKSVFLDDDPWFGEPPDSDPFPFQHRKTRS-----LAIGSSLLNGET--EE 235
GTEM++Y KG ++ + S P H RS + G S NG + +
Sbjct: 146 GTEMSLYSKGSLERINSETLVT----SSRLPDTHNTDRSRNSEDTSNGFSATNGASGAKI 201
Query: 236 NGDSEK----LIRRRQKADGELLPREENGSSAVLA---RAGKGLALRPKSGSRQDLNKSQ 288
NG ++ IRRRQK + + + + V + K L RP S RQ+++ S
Sbjct: 202 NGTAKAKQDGSIRRRQKVEADQVSNTTDTQDDVFTDPIKMTKSLLPRPISSIRQNMDTSN 261
Query: 289 QNLIALAEPSFGDGLHAVRKSSSTPEFQEPEXXXXXXXXXXXXXXKWTLKPDAFTLPLPL 348
+ SF G +VRKS STP F + E WT ++FT
Sbjct: 262 PESSLKSNGSFLSGFRSVRKSPSTPNFADAENGISMWSSSA-----WTFNHESFT----R 312
Query: 349 PLFDNIPKPIAAWRNKAARD 368
PL D +PKP A R KAA D
Sbjct: 313 PLLDGLPKPTAPRRTKAALD 332
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,382,267
Number of extensions: 616246
Number of successful extensions: 1412
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 4
Length of query: 368
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 266
Effective length of database: 11,709,973
Effective search space: 3114852818
Effective search space used: 3114852818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)